View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4196_low_6 (Length: 253)
Name: NF4196_low_6
Description: NF4196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4196_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 24256845 - 24257016
Alignment:
| Q |
62 |
gtaattgttttttaacaagtggaactcaattgtatcattttggcctgaaaataac----tgggtcattttggatcggcacgtttgattgtattaaatata |
157 |
Q |
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| T |
24256845 |
gtaattattttttaacaagtggaactcaaatgtatcattttggcctgaaaataactaattgggtcattttggatccgctcgtttgatcgtattaagtata |
24256944 |
T |
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| Q |
158 |
ttttttaataaccatgatatttgaacatcttaatttacgatata-ctatttaacatctcattttatctatat |
228 |
Q |
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| T |
24256945 |
ttttttaacaacaataatatttgaacatcctaatttcttatatatctattcaacttttcattttatctatat |
24257016 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24256784 - 24256817
Alignment:
| Q |
1 |
taatattagccagtcaaacacttcaaaatgaagt |
34 |
Q |
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| T |
24256784 |
taatattagccagtcaaacacttcaaaatgaagt |
24256817 |
T |
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