View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4196_low_9 (Length: 238)
Name: NF4196_low_9
Description: NF4196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4196_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 6752504 - 6752336
Alignment:
| Q |
26 |
attatgccggtagtagcaataaacctttgacctcgtcctgatcacactactccttaacaccttcacctagccaccaaaccaaccttatatctcacaaatg |
125 |
Q |
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| T |
6752504 |
attatgccggtagtagcgataaacctttgacctcgtcctgatcacactactccttaacaccttaacctagccaccaaaccaaccttatatctcacaaatg |
6752405 |
T |
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| Q |
126 |
gctacgatgttgatactcattcatgatgttgatactcattcataatcatgaggaatctcaatgttttcttcttcatttggcattagta |
213 |
Q |
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| T |
6752404 |
gctacgatgttgatactcat-------------------tcataatcatgaggaatctcaatgttttcttcttcatttggcattagta |
6752336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 6760611 - 6760562
Alignment:
| Q |
189 |
ttttcttcttcatttggcattagtatttagtattgacaccttgttatgac |
238 |
Q |
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| T |
6760611 |
ttttcttcttcatttggcattaatatttagcattgacaccttgttatgac |
6760562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 6760713 - 6760620
Alignment:
| Q |
17 |
actgttagcattatgccggtagtagcaataaacctttgacctcgtcctgatcacactactccttaacaccttcacctagccaccaaaccaaccttat |
113 |
Q |
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||||||||| |||||||| |||| | || ||||||||| ||| || ||||| ||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
6760713 |
actgttagctttatgccgatagtggtgatgaacctttgatctc---ctaatcactatactccttaacgcctccacctagccaccaaaccaaccttat |
6760620 |
T |
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