View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_high_14 (Length: 305)
Name: NF4197_high_14
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 49276133 - 49275856
Alignment:
| Q |
12 |
acagatcgatgcaggaaattgtatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276133 |
acagatcgatgcaggaaattgtatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttat |
49276034 |
T |
|
| Q |
112 |
cagagactgaacgagctagagcaatatttgagtctgcaattgctcgaccagagttggtaaagcaagagttgttttggaaggcattccatgattttgagac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276033 |
cagagactgaacgagctagagcaatatttgagtctgcaattgctcgaccagaattggtaaagcaagagttgttttggaaggcattccatgattttgagac |
49275934 |
T |
|
| Q |
212 |
tgctaagtgtgaatttgagagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatg |
289 |
Q |
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| T |
49275933 |
tgctaagtgtgaatttgagagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatg |
49275856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 49279690 - 49279422
Alignment:
| Q |
12 |
acagatcgatgcaggaaattgtatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttat |
111 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||| || |
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| T |
49279690 |
acagatcgatgcaggaatttgtatgtaaagtatctggagtggtcagctaaaaaatgcaatgcatggagcaagtatgcagaagagttggagagatcttcat |
49279591 |
T |
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| Q |
112 |
cagagactgaacgagctagagcaatatttgagtctgcaattgctcgaccagagttggtaaagcaagagttgttttggaaggcattccatgattttgagac |
211 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||| |
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| T |
49279590 |
ctgagactgaacgagctagagcaatatttgagtctgcaattgctcgaccag---------agcatgagttgttatggaaggcattccttgattttgagac |
49279500 |
T |
|
| Q |
212 |
tgctaagtgtgaatttgagagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatg |
289 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
49279499 |
tgctaagattgaatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatg |
49279422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 2289143 - 2289006
Alignment:
| Q |
14 |
agatcgatgcaggaaattgtatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttatca |
113 |
Q |
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|||| ||||||| ||| | |||| ||| ||| ||||||||||| |||| || ||| | ||||||||||||||||||||| | |||||||||||| | |
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| T |
2289143 |
agatagatgcagaaaactatatgaaaagtatttggagtggtcacctgaaaattgctatgcatggagcaagtatgcagaac---tagagagatctttagct |
2289047 |
T |
|
| Q |
114 |
gagactgaacgagctagagcaatatttgagtctgcaattgc |
154 |
Q |
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| T |
2289046 |
gagactgaacgagctagagcaatatttgagcttgcaattgc |
2289006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 2288607 - 2288554
Alignment:
| Q |
200 |
tgattttgagactgctaagtgtgaatttgagagaacaagagtgcattatgaaag |
253 |
Q |
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||||||||| ||||| ||||||||||||||||| |||||| || ||||||||| |
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| T |
2288607 |
tgattttgaaactgccgagtgtgaatttgagagagcaagagcgctttatgaaag |
2288554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 34789793 - 34789930
Alignment:
| Q |
14 |
agatcgatgcaggaaattgtatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttatca |
113 |
Q |
| |
|
|||||||||||| ||| | |||| ||| ||| |||||||| || |||| || ||| | |||||| |||||||||||||| | |||||||||||| | |
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| T |
34789793 |
agatcgatgcagaaaactatatgaaaaatatttggagtggacacctgaaaattgctatgcatggtgcaagtatgcagaac---tagagagatctttagct |
34789889 |
T |
|
| Q |
114 |
gagactgaacgagctagagcaatatttgagtctgcaattgc |
154 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||| |
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| T |
34789890 |
gagaccgaacgagctagagcaatatttgagcttgcaattgc |
34789930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 34790156 - 34790209
Alignment:
| Q |
200 |
tgattttgagactgctaagtgtgaatttgagagaacaagagtgcattatgaaag |
253 |
Q |
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||||||||| |||| | ||||||||||||||||| ||||||||| ||||||||| |
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| T |
34790156 |
tgattttgaaactgttgagtgtgaatttgagagagcaagagtgctttatgaaag |
34790209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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