View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_high_18 (Length: 272)
Name: NF4197_high_18
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 5264768 - 5265022
Alignment:
| Q |
1 |
acacacatatagatacacacaaaacaacaattaaatccataaattaaattttcttttattacaaaatccatggaatcaattaaaagttggaagcggggaa |
100 |
Q |
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| T |
5264768 |
acacacatatagatacacacaaaacaacaattaaatccataaattaaaatttcttttattacaaaatccatggaatcaattaaaagttggaagtggggaa |
5264867 |
T |
|
| Q |
101 |
tatccaaaggagtacccnnnnnnnncctaaacaaaagtgagtgctatatagctaagatgagtggattggtggaagtcattttcattatcctattgaggaa |
200 |
Q |
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| T |
5264868 |
tatccaaaggagtacccaaaaaaaacctaaacaaaagtgagtgctatatagctaagatgagtggattggtgggagtcattttcattatcctattgaggaa |
5264967 |
T |
|
| Q |
201 |
gtacaaaacaaaaacatgccaaaatgactcaacactacacaccacatattcaatg |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5264968 |
gtacaaaacaaaaacatgccaaaatgactcaacactacacaccacatattcaatg |
5265022 |
T |
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