View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_high_20 (Length: 266)
Name: NF4197_high_20
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 31733345 - 31733091
Alignment:
| Q |
1 |
atcatgttaaacaggtttagatttcacttttaatagctagttcattagacgagtgatactcatgccggggtaggcttgagaattgagatcaattctcaca |
100 |
Q |
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| T |
31733345 |
atcatgttaaacaggtttagatctcacttctagtagctagttcattagacgagtgatactcatgtcggggtaggcttgagaattgagatcaattctcaca |
31733246 |
T |
|
| Q |
101 |
acatgacttgaatttaattacgaaaagctagatgtgtccaaatgcacatatatattgtagatatatctttaaattcttaacttgctatctaataggtact |
200 |
Q |
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| T |
31733245 |
acatgacttgaatttaattacgaaaagttagatgtgtccaaatgcacatatacattgtagatatatctttaaattcttaacttgctatctgatgggtact |
31733146 |
T |
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| Q |
201 |
aagataccaaccacattagttttaagaactttatgaaactttagccacttttcat |
255 |
Q |
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| T |
31733145 |
aagataccaaccacattacttttaagaattttatgaaactttagccacttttcat |
31733091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 32852769 - 32853032
Alignment:
| Q |
1 |
atcatgttaaacaggtttagatttcacttttaatagctagttcattagacgagtgatactcatgccggggtaggcttgagaattgagatcaattctcaca |
100 |
Q |
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|||||||||||| || |||||| ||||| |||||||||||| ||| |||||| ||| ||||||||||||||||||||||| |||||| ||||| |
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| T |
32852769 |
atcatgttaaacgggattagatctcactcctaatagctagtttatttgacgagggatgctcatgccggggtaggcttgaga-------tcaattttcaca |
32852861 |
T |
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| Q |
101 |
acatgacttgaatttaattacgaaaagcta-----------gatgtgtccaaatgcacatatatattgtagatatatc-----tttaaattcttaacttg |
184 |
Q |
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| T |
32852862 |
acatgacttgaatttcaccacgaaaagctaattcattggaagatgtgtccaaatacacatatacattgtagatatatccatcttttaagttcttaacttg |
32852961 |
T |
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| Q |
185 |
ctatctaataggtactaagataccaaccacattagttttaagaactttatgaaactttagccacttttcat |
255 |
Q |
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|||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32852962 |
ctatctgatgggtactaagataccaaccacatcagttttaagaactttatgaaactttagccacttttcat |
32853032 |
T |
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