View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_high_24 (Length: 249)
Name: NF4197_high_24
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 2094608 - 2094457
Alignment:
| Q |
1 |
ttgtctagttaaatgatttgttgtattcgactcaaatatattgtattgttaaaataattgttctaaaattcatattttagctcctttgtgacattatcat |
100 |
Q |
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| T |
2094608 |
ttgtctagttaaatgatttgctgtattcgactcaaatatattgtattgttaaaaaaattgttctaaaactcatattttagctcctttgtgacattatcat |
2094509 |
T |
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| Q |
101 |
catttgtaagtcatgtataagctaatatgatttgtatagtagagaaagtaat |
152 |
Q |
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| T |
2094508 |
catttgtaagtcatgtataagctaatatgatttgtacagtagagaaagtaat |
2094457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 2094449 - 2094409
Alignment:
| Q |
198 |
ctaacatataatatagacaaattaataattttagctcctct |
238 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
2094449 |
ctaaaatataatatagacaaattaataattttagctcctct |
2094409 |
T |
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