View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_high_4 (Length: 523)
Name: NF4197_high_4
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 4027912 - 4028272
Alignment:
| Q |
11 |
cacagaaagcaaaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatgaat |
110 |
Q |
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| T |
4027912 |
cacagaaagcaaaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatgaat |
4028011 |
T |
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| Q |
111 |
gtcattgaccttgcagtttaaagtgtgaactaatacacattcacactcccacagagcattagatctgtatattattnnnnnnntattaatgtcaccatta |
210 |
Q |
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| T |
4028012 |
gtcattgaccttgcagtttaaagtgtgaactaatacacattcacactcccacagagcattagatctgtatattattaaaaaaatattaatgtcaccatta |
4028111 |
T |
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| Q |
211 |
tttaaatataaaatagcaggggcaaacgttgagttgcttaacaatttacatgctggaattatctgtatgaagcatctgacaatgacatgcagttatcttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028112 |
tttaaatataaaatagcaggggcaaacgttgagttgcttaacaatttacatgctggaattatctgtatgaagcatctgacaatgacatgcagttatcttc |
4028211 |
T |
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| Q |
311 |
aaatttaaatatattaacatagtgttaannnnnnnattaatgttggttgaaagaatttaaa |
371 |
Q |
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| T |
4028212 |
aaatttaaatatattaacatagtgttaatttttttattaatgttggttgaaagaatttaaa |
4028272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 4028328 - 4028406
Alignment:
| Q |
427 |
aactaaccttgacctttttcttccaaatgtctcataatttaactctcttcattaagaggaattgttgggatctaatttt |
505 |
Q |
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| T |
4028328 |
aactaaccttgacctttttcttccaaatgtctcataatttaactctcttcattaagaggaattgttgggatctaatttt |
4028406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 4215913 - 4216055
Alignment:
| Q |
20 |
caaaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatg--------aatg |
111 |
Q |
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| T |
4215913 |
caaaagtaatggtgatagccataagaaagctataacggaacttcaatgctttggccgctagagatctgattcaactttctatcatatggaagaagcaatg |
4216012 |
T |
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| Q |
112 |
tcattgaccttgcagtttaaagtgtgaactaatacacattcac |
154 |
Q |
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| T |
4216013 |
tcattgaccttgcatttaaaagtgtgaactcgtacacattcac |
4216055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 3950935 - 3950879
Alignment:
| Q |
42 |
aagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttc |
98 |
Q |
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| T |
3950935 |
aagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttc |
3950879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 3796811 - 3796931
Alignment:
| Q |
42 |
aagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatg--------aatgtcattgaccttgcagtttaaag |
133 |
Q |
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| T |
3796811 |
aagaaagctataacggaacttcaatgctttggccgctagtgatctgattcaactttctatcatatggaagaagcaatgtcattgaccttgcatttaaaag |
3796910 |
T |
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| Q |
134 |
tgtgaactaatacacattcac |
154 |
Q |
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| T |
3796911 |
tgtgaactcatacacattcac |
3796931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 3961159 - 3961099
Alignment:
| Q |
46 |
aagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatat |
106 |
Q |
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| T |
3961159 |
aagcaattactaaccttcaatgatttggctgctagagatctgtttcaactttctctcatat |
3961099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 3950786 - 3950699
Alignment:
| Q |
194 |
tattaatgtcaccattatttaaatataaaatagcaggggcaaacgttgagttgcttaacaatttacatgctggaattatctgtatgaa |
281 |
Q |
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||||||| ||| ||||||| | |||||||||||||||||||| ||||| |||| |||| | ||||||||||| |||||||||||| |
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| T |
3950786 |
tattaatctcatcattattcaggtataaaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaa |
3950699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 4013923 - 4014021
Alignment:
| Q |
201 |
gtcaccattatttaaatataaaatagcaggggcaaacgttgagttgcttaacaatttacatgctggaattatctgtatgaagcatctgacaatgacatg |
299 |
Q |
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|||||||||||| ||||| ||||| |||| | |||||||||| |||| ||| | || ||| ||||||||||||||| || ||| ||||||||||||| |
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| T |
4013923 |
gtcaccattattcaaataaaaaattgcagagtcaaacgttgacttgccaaactgtatagatgatggaattatctgtatcaaccatgtgacaatgacatg |
4014021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 4221238 - 4221283
Alignment:
| Q |
46 |
aagcaattactgaccttgaatgctttggctgctagagatctgattc |
91 |
Q |
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| T |
4221238 |
aagcaattactgaccttaaatgctttgtttgctagagatctgattc |
4221283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 3822703 - 3822750
Alignment:
| Q |
44 |
gaaagcaattactgaccttgaatgctttggctgctagagatctgattc |
91 |
Q |
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| T |
3822703 |
gaaagaaattactgaccttaaatgctttgtttgctagagatctgattc |
3822750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 4014503 - 4014577
Alignment:
| Q |
257 |
tacatgctggaattatctgtatgaagcatc----tgacaatgacatgcagttatcttcaaatttaaatatattaa |
327 |
Q |
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||||||||||||||||||||||||| | | |||| ||||||||| ||||||||||||| ||||||| |||| |
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| T |
4014503 |
tacatgctggaattatctgtatgaatgaacaatgtgactatgacatgcggttatcttcaaatataaatattttaa |
4014577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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