View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_1 (Length: 610)
Name: NF4197_low_1
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 11 - 595
Target Start/End: Original strand, 936631 - 937215
Alignment:
| Q |
11 |
catcatcatcaagcaaaagttccatgtccattcattctatgggttctagcaagaggaacaattctgtgagggaaatgagtagtttaaaccattcaggatc |
110 |
Q |
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| T |
936631 |
catcatcatcaagcaaaagttccatgtccattcattctatgggttctagcaagaggaacaattctgtgagggaaatgagtagtttaaaccattcaggatc |
936730 |
T |
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| Q |
111 |
aaaaagtactgtgaggtatggttcaaaaggtggtggtgattctgaagggttaaccatgtcacaaagagaacttagagatgaagatgcaagattggtatat |
210 |
Q |
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| T |
936731 |
aaaaagtactgtgaggtatggttcaaaaggtggtggtgattctgaagggttaaccatgtcacaaagagaacttagagatgaagatgcaagattggtatat |
936830 |
T |
|
| Q |
211 |
ataaatgatcctgagaaaaccaatgagaattttgagtttttcggaaattcaattcgaactgctaaatactcaattctcactttcattccaaggaatttgt |
310 |
Q |
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| T |
936831 |
ataaatgatcctgagaaaaccaatgagaattttgagtttttcggaaattcaattcgaactgctaaatactcaattctcactttcattccaaggaatttgt |
936930 |
T |
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| Q |
311 |
ttgaacagtttcatagagttgcttatatatattttctcatcattgctattctcaatcagcttcctcaacttgcagtatttggaagatatgtttcgattct |
410 |
Q |
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| T |
936931 |
ttgaacagtttcatagagttgcttatatatattttctcatcattgctattctcaatcagcttcctcaacttgcagtatttggaagatatgtttcgattct |
937030 |
T |
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| Q |
411 |
accgttggcttttgttctgtttgttactggtgtgaaagatgcttttgaggattggaggagacacaattcagataaagttgagaataacaggttagcaaca |
510 |
Q |
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| T |
937031 |
accgttggcttttgttctgtttgttactggtgtgaaagatgcttttgaagattggaggagacacaattcagataaagttgagaataacaggttagcaaca |
937130 |
T |
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| Q |
511 |
attttgatgaatgacggtagtttcattgagaagaaatggaaggatattcgtgttggtgagattgtaaaaatcaaaacgaatgaaa |
595 |
Q |
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| T |
937131 |
attttgatgaatgacggtagtttcattgagaagaaatggaaggatattcgtgttggtgagattgtaaaaatcaaaacaaatgaaa |
937215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 119 - 572
Target Start/End: Original strand, 16941220 - 16941670
Alignment:
| Q |
119 |
ctgtgaggtatggttcaaaaggtggtggtgattctgaagggttaaccatgtcacaaagagaacttagagatgaagatgcaagattggtatatataaatga |
218 |
Q |
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| T |
16941220 |
ctgtgagatatggatcaaagggtgctgttgattctgaagcattcagcatgtctcagaaagaaatcagtgatgaagatgctaggttgatttatgttgatga |
16941319 |
T |
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| Q |
219 |
tcctgagaaaaccaatgagaattttgagtttttcggaaattcaattcgaactgctaaatactcaattctcactttcattccaaggaatttgtttgaacag |
318 |
Q |
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| T |
16941320 |
tcctgatagaacaaatgagagatttgaatttgctgggaattcggttcggaccggaaaatactcttttataacttttcttcctaggaatttgtttgaacag |
16941419 |
T |
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| Q |
319 |
tttcatagagttgcttatatatattttctcatcattgctattctcaatcagcttcctcaacttgcagtatttggaagatatgtttcgattctaccgttgg |
418 |
Q |
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| T |
16941420 |
tttcatagagttgcttatatttatttccttataattgctattcttaatcagttacctcaactagctgtttttggtagaggtgtatcaattttgccattag |
16941519 |
T |
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| Q |
419 |
cttttgttctgtttgttactggtgtgaaagatgcttttgaggattggaggagacacaattcagataaagttgagaataacaggttagcaacaattttgat |
518 |
Q |
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| T |
16941520 |
cttttgttcttcttgttactgctgtgaaagatgcatatgaggattggaggagacatagatcagataaagttgagaataataggttaggattggttttggt |
16941619 |
T |
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| Q |
519 |
gaatgacggtagtttcattgagaagaaatggaaggatattcgtgttggtgagat |
572 |
Q |
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| T |
16941620 |
taat---ggtcatttcattgagaagaaatggaaagatattagagttggtgagat |
16941670 |
T |
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