View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_10 (Length: 372)
Name: NF4197_low_10
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 34385316 - 34384970
Alignment:
| Q |
16 |
caaacttctcaatcacttgaggcagtatttgtaaattcaggggacaatccatttgagctaatcaaagattctatcaagtatgtttccttgttctagaatc |
115 |
Q |
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| T |
34385316 |
caaacttctcaatcacttgaggcagtatttgtaaattcaggggacaatccatttgagctaatcaaagattctatcaagtatgtttccttgttctagaatc |
34385217 |
T |
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| Q |
116 |
ttctaactctttacaaggtttattagagttaagcacgtatttcatatccattttcatttctaatgacataggatattagagaaacacaaaggaactttct |
215 |
Q |
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| T |
34385216 |
ttcttactctttacaaggtttattagagttaagcacatatttcatatccattttcatttctaatgacataggatattagagaaacacaaaggaactttct |
34385117 |
T |
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| Q |
216 |
gtcatcttgaaaacaaggaaattcctgtacatcttgatttgtttggatggtgcacttgggatgcattctacactcaagtaaatccacaaggaataaaaga |
315 |
Q |
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| T |
34385116 |
gtcatcttgaaaacaaggaaattcctgtacatcttgatttgtttggatggtgcacttgggatgcattctacactcaagtaaatccacaaggaataaaaga |
34385017 |
T |
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| Q |
316 |
gggcattcaaaggtacgcagtactagtactataatgtgcattttcat |
362 |
Q |
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| T |
34385016 |
gggcattcaaaggtacgtagtactagtactataatgtgcattttcat |
34384970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 27785402 - 27785523
Alignment:
| Q |
219 |
atcttgaaaacaaggaaattcctgtacatcttgatttgtttggatggtgcacttgggatgcattctacactcaagtaaatccacaaggaataaaagaggg |
318 |
Q |
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|||||||||||||||| | || | | ||||| ||| ||||||||||||||| ||||| | ||| |||| | ||||||||||||||||| |||||||||| |
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| T |
27785402 |
atcttgaaaacaaggagactcgtctgcatctgtattggtttggatggtgcacatgggaagaattttacaataaagtaaatccacaaggagtaaaagaggg |
27785501 |
T |
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| Q |
319 |
cattcaaaggtacgcagtacta |
340 |
Q |
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| T |
27785502 |
catccaagggtacctagtacta |
27785523 |
T |
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