View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_11 (Length: 363)
Name: NF4197_low_11
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 47117171 - 47117508
Alignment:
| Q |
16 |
catgaacaacatcgggagaacacaaaacaatgccacaaaagccgctgctcaacgactcgcacaagttatgtcgcatcaaacaattgatgaagaagaagac |
115 |
Q |
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| T |
47117171 |
catgaacaacatcgggagaacacaaaacaatgccacaaaagccgctgctcaacgacttgcacaagttatgtcgcatcaaacaattgatgaagaagaagac |
47117270 |
T |
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| Q |
116 |
gatgacgatgttcctcttgactattctgcaattagtggcactagaagcatcggacttggtggtggaagagcagcgcggcctcgctcccctgtggtagcta |
215 |
Q |
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| T |
47117271 |
gatgacgatgttcctcttgactattctgcaattagtggcactagaagcatcggacttggtggtggaagagcagcgcggcctcgctcccctgtggtagcta |
47117370 |
T |
|
| Q |
216 |
ttattcctttcttacttgtatttatattgatatgttgttgaatgttcattcatccaattcgatgatgttgttgcattctattagacagttaagagtactc |
315 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47117371 |
ttatttctttcttacttgtatttatattgatatgttgttgaatgttcattcatccaattcgatgatgttgttgcattctattagacagttaagagtactc |
47117470 |
T |
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| Q |
316 |
aagaacaacctccaccaatgagacctcgttcacctatg |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
47117471 |
aagaacaacctccaccaatgagacctcgttcacctatg |
47117508 |
T |
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