View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_13 (Length: 342)
Name: NF4197_low_13
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 15281911 - 15282239
Alignment:
| Q |
1 |
atacttcactgctacttgagtgttacaaaaacagaaaaggttccgggaattgatgtgaaacaatgtgtatgatttcaatatggttttaagtcacaattcc |
100 |
Q |
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| T |
15281911 |
atacttcactgctacttgagtgttacaaaaacagaaaaggttccgggaattgatgtgaaacaatgtgtatcatttcaatatggtttgaagtcacaatacc |
15282010 |
T |
|
| Q |
101 |
aaatagaaacagaaatgttggcatgtgcacataataaaaacatctacaagtacatgcaatgctagaatagatgtaaagtaagtcgcaagtacctatgcag |
200 |
Q |
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| T |
15282011 |
aaatagaaacagaaatgttggcatgtgcacatca-aaaaacatctacaagtacatgcaatgctagaatagatgtaaagtaagtcgcaagtacctatgcag |
15282109 |
T |
|
| Q |
201 |
tgcacaagctttacatttgctgcaatacaccaacgtctcttcgaagcctttatcgccacacgtaagacaaacacatgcctgcaacaagtaggaaattttt |
300 |
Q |
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| T |
15282110 |
tgcacaacctttacatttgctgcaatacaccagcgtatcttcgaagcctttatcgccacacgtaagacaaacacatgcctgcaacaagtaggcaaagttt |
15282209 |
T |
|
| Q |
301 |
tacagcaaggattcataaagagagcagtat |
330 |
Q |
| |
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| T |
15282210 |
tacagcaaggattcataaagagagcagtat |
15282239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 15440597 - 15440505
Alignment:
| Q |
177 |
agtaagtcgcaagtacctatgcagtgcacaagctttacatttgctgcaatacaccaacgtctcttcgaagcctttatcgccacacgtaagaca |
269 |
Q |
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| T |
15440597 |
agtaagtcccaagtacctatgcagtgcgcaagctttacatttgttgcaatacaccaacgtctcttcaaagcctacatcgccacatgtaagaca |
15440505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 11789231 - 11789373
Alignment:
| Q |
177 |
agtaagtcgcaagtacctatgcagtgcacaagctttacatttgctgcaatacaccaacgtctcttcgaagcctttatcgccacacgtaagacaaacacat |
276 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||| ||||||| ||||||| |||||||||||||| |||||| || |||||||||||||||||| | |
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| T |
11789231 |
agtaagtaacaagtacctatgcagagcacattcttcacatttgttgcaatataccaacgtctcttcaaagcctacgtcaccacacgtaagacaaacaggt |
11789330 |
T |
|
| Q |
277 |
gcctgcaacaagtaggaaattttttacagcaaggattcataaa |
319 |
Q |
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||||||||||| || || ||||| |||| |||||||||| |
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| T |
11789331 |
atctgcaacaagttggtaaagttttaatgcaatgattcataaa |
11789373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 17544047 - 17544152
Alignment:
| Q |
187 |
aagtacctatgcagtgcacaagctttacatttgctgcaatacaccaacgtctcttcgaagcctttatcgccacacgtaagacaaacacatgcctgcaaca |
286 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||| | ||||| |||||| |||||| | || |||||||||||||||||| | ||||||||| |
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| T |
17544047 |
aagtacctatgcaatgcacaaactttacatttgaaacaatatatcaacgcctcttcaaagcctatttcaccacacgtaagacaaacaggtacctgcaaca |
17544146 |
T |
|
| Q |
287 |
agtagg |
292 |
Q |
| |
|
|||||| |
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|
| T |
17544147 |
agtagg |
17544152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 11780810 - 11780906
Alignment:
| Q |
177 |
agtaagtcgcaagtacctatgcagtgcacaagctttacatttgctgcaatacaccaacgtctcttcgaagcctttatcgccacacgtaagacaaaca |
273 |
Q |
| |
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||||||| |||||||||||||||||||||| ||| |||||| | ||||| |||||||| ||||| ||||||| ||| ||||| ||||||||||| |
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| T |
11780810 |
agtaagtaacaagtacctatgcagtgcacaatcttcacatttcttacaatataccaacgtttcttcaaagccttcatcaccacatttaagacaaaca |
11780906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 502573 - 502676
Alignment:
| Q |
186 |
caagtacctatgcagtgcacaagctttacatttgctgcaatacaccaacgtctcttcgaagcctttatcgccacacgtaagacaaacacatgcctgcaac |
285 |
Q |
| |
|
||||||||||||||| ||| | ||| ||||||| ||||||| ||||| | ||||| |||||| ||| | |||||||||||||||| || |||||||| |
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| T |
502573 |
caagtacctatgcagagcatatacttcacatttgttgcaatataccaatgcctctttaaagcctacatccctacacgtaagacaaacagatacctgcaac |
502672 |
T |
|
| Q |
286 |
aagt |
289 |
Q |
| |
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|||| |
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|
| T |
502673 |
aagt |
502676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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