View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_15 (Length: 317)
Name: NF4197_low_15
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 54619743 - 54620050
Alignment:
| Q |
1 |
tgtcaaactaaacataacactttgtatgtaccaaatgaaccttaaaccagtgattcaattaagccttatccatttagttgggataaagcagaaagaaaac |
100 |
Q |
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| T |
54619743 |
tgtcacactaaacataacactttgtatgtaccaaattaaccttaaaccagtgattcaattaagccttatccatttagttgggataaagcagaaagaaaac |
54619842 |
T |
|
| Q |
101 |
actgaacatgttannnnnnnnn-agagagcagggatagtggaccatcataaagtagccaattggggacagaataagagggtgttgattgagacagtgata |
199 |
Q |
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| T |
54619843 |
actgaacatgttaggggggggggagagagcagggatagtggaccatcataaagtagccaattggggacagaataagagggtgttgattgagacagtgata |
54619942 |
T |
|
| Q |
200 |
gctaagccacagaatgatgaatacatagctctaagtatgcggtgtaaaggagtgttatgggcagacatttctttgtctccaatttattagaatcatattt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54619943 |
gctaagccacagaatgatgaatacatagctctaagtatgcggtgtaaaggagtgttatgggcagacatttctttgtctccaatttattagaatcatattt |
54620042 |
T |
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| Q |
300 |
tgtctctg |
307 |
Q |
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|||||||| |
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| T |
54620043 |
tgtctctg |
54620050 |
T |
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