View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4197_low_18 (Length: 280)
Name: NF4197_low_18
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 26454241 - 26454503
Alignment:
| Q |
16 |
tcaaccgtgttccatgtttcgtgatacacacaactcattgcacacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgc |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454241 |
tcaaccttgttccatgtttcgtgatacac--aactcattgcacacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgc |
26454338 |
T |
|
| Q |
116 |
gtggctactagcacccgttcaacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaacta |
215 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454339 |
gtggctcctagcacccgttcgacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaacta |
26454438 |
T |
|
| Q |
216 |
tacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccacatagttgtttgtttt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26454439 |
tacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccccatagttgtttgtttt |
26454503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University