View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_2 (Length: 591)
Name: NF4197_low_2
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 20 - 580
Target Start/End: Original strand, 28594906 - 28595466
Alignment:
| Q |
20 |
actagctcgtaggagggagacacagttgccatggtcatgtcctttggcaatgtgagccatctcttgcattggaccaccgttggagagtatgtcccattca |
119 |
Q |
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| T |
28594906 |
actagctcgtaggagggagacacagttgccatggtcatgtcctttggcaatgtgagccatctcttgcattggaccaccgttggagagtatgtcccattca |
28595005 |
T |
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| Q |
120 |
cttctaagcttctcgttgcggaggaaatcaaatactttttgtggtgaagcgggtagccaaactgaggttgctgcactaagcacaatccctggtggctcac |
219 |
Q |
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| T |
28595006 |
cttctaagcttctcgttgcggaggaaatcaaatactttttgtggtgaagcgggtagccaaactgaggttgctgcactaagcacaatccctggtggctcac |
28595105 |
T |
|
| Q |
220 |
ccggatcatccacacttttccttgtcattaccctaacgtcctcgcccacgttccctgcattcaatttgttccatttgtgcaccgtcgatgcacacactcc |
319 |
Q |
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| T |
28595106 |
ccggatcatccacacttttccttgtcattaccctaacgtcctcgcccacgttccctgcattcaatttgttccatttgtgcaccgtcgatgcacacactcc |
28595205 |
T |
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| Q |
320 |
ggcacaaaaattgtttgtcattcggtgcgctagctttagcatgctacgccttcctcccgcacttattgctacatgttcataggaacataacaccttgggt |
419 |
Q |
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| T |
28595206 |
ggcacaaaaattgtttgtcattcggtgcgctagctttagcatgctacgccttcctcccgcacttattgctacatgttcataggaacataacaacttgggt |
28595305 |
T |
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| Q |
420 |
tattgtggacaaatgcattttttaaatgcgtgtgtatatatggtgtttgaatcctctatacaactgcaacatcataatgcagttgtacgttgaggatcct |
519 |
Q |
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| T |
28595306 |
tattgtggacaaatgcattttttaaatgcgtgtgtatatatggtgtttgaatcctctatacaactgcaacatcataatgcagttgtatgttgaggatcct |
28595405 |
T |
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| Q |
520 |
agtcgataagtgtggatggatggatatatacctgagtgttctctagaggggagtgatgatg |
580 |
Q |
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| T |
28595406 |
agtcgataagtgtggatggatggatatatacctgagtgttctctagaggggagtgatgatg |
28595466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 39 - 389
Target Start/End: Original strand, 12322886 - 12323236
Alignment:
| Q |
39 |
acacagttgccatggtcatgtcctttggcaatgtgagccatctcttgcattggaccaccgttggagagtatgtcccattcacttctaagcttctcgttgc |
138 |
Q |
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| T |
12322886 |
acacagttgccatgatcttgtcctttagcaatatgagccatctcttgcataggaccaccattagacagtatatcccattcactacggagcctttcgtcgc |
12322985 |
T |
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| Q |
139 |
ggaggaaatcaaatactttttgtggtgaagcgggtagccaaactgaggttgctgcactaagcacaatccctggtggctcacccggatcatccacactttt |
238 |
Q |
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| T |
12322986 |
gcagaaaatcgaacagtctttgaggtgaaaccgggagccatactgacgtggctgcgctcaacacgatccctggtggctcaccaggatcatcgacgctctt |
12323085 |
T |
|
| Q |
239 |
ccttgtcattaccctaacgtcctcgcccacgttccctgcattcaatttgttccatttgtgcaccgtcgatgcacacactccggcacaaaaattgtttgtc |
338 |
Q |
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| T |
12323086 |
tcgtgtcatcaccctcacatcttcgtcaacattaccagggttaagtttgttccatttgtggaccgtggaggcacagacaccggcacagaagttgttagtc |
12323185 |
T |
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| Q |
339 |
attcggtgcgctagctttagcatgctacgccttcctcccgcacttattgct |
389 |
Q |
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| T |
12323186 |
attcgttgtgcaagcttcagcatgcttcgccttcctcctgctgttattgct |
12323236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 45743889 - 45744079
Alignment:
| Q |
57 |
tgtcctttggcaatgtgagccatctcttgcattggaccaccgttggagagtatgtcccattcacttctaagcttctcgttgcggaggaaatcaaatactt |
156 |
Q |
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|||||||||||||||||| ||||||||||||| || ||||| || || | |||||||| || ||||||||| | || | || || |||||||| | | |
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| T |
45743889 |
tgtcctttggcaatgtgaaccatctcttgcatgggtccaccattagacaaaatgtcccactcgcttctaagcctttcatcacgcagaaaatcaaacagtc |
45743988 |
T |
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| Q |
157 |
tttgtggtgaagcgggtagccaaactgaggttgctgcactaagcacaatccctggtggctcacccggatcatccacacttttccttgtcat |
247 |
Q |
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| T |
45743989 |
tttgtcgtgaaacgggcatccaaacagatgttgcagcgctgagcacaataccgggaggctcgccagggtcatcaacatttttcctagtcat |
45744079 |
T |
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