View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4197_low_21 (Length: 270)
Name: NF4197_low_21
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 39369289 - 39369531
Alignment:
| Q |
12 |
gaagaaaatatgtgatcatccacttcttctgacaaagcgtgcagctgaggatgtgttgaacgggatggactcaatgctcaagccaaacgaggttaatgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369289 |
gaagaaaatatgtgatcatccacttcttctgacaaagcgtgcagctgaggatgtgttgaacgggatggactcaatgctcaagccaaacgaggttaatgtt |
39369388 |
T |
|
| Q |
112 |
gcagagatattggtgaagcatataacggatgttgtaaaaacatatacgtttaaagatgagaacgatgtaccatgcaaaatatcttttatcatgtcattat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369389 |
gcagagatattggtgaagcatataacggatgttgttaaaacatatacgtttaaagatgagaacgatgtaccatgcaaaatatcttttatcatgtcattat |
39369488 |
T |
|
| Q |
212 |
tggtaagcgctgatgtcatgtaggtgcaatatatgctgttagt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369489 |
tggtaagcgctgatgtcatgtaggtgcaatatatgctgttagt |
39369531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 39355106 - 39355339
Alignment:
| Q |
12 |
gaagaaaatatgtgatcatccacttcttctgacaaagcgtgcagctgaggatgtgttgaacgggatggactcaatgctcaagccaaacgaggttaatgtt |
111 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| ||||| || || |||||||| ||| | ||| |||| |||||||| |||||| | |||||||||||| |
|
|
| T |
39355106 |
gaagaaaatatgtgatcatccgcttctgttgactaagcgggctgcggaggatgtattggatgggttggaatcaatgctaaagccagaggaggttaatgtt |
39355205 |
T |
|
| Q |
112 |
gcagagatattggtgaagcatataacggatgttgtaaaaacatatacgtttaaagatgagaacgatgtaccatgcaaaatatcttttatcatgtcattat |
211 |
Q |
| |
|
|| || | ||| | || ||||||| | ||||||| | ||||| ||| |||| |||| || | |||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
39355206 |
gcggaaaaattagcgatgcatatagcagatgttgcagaaacagataagtttgaagacaagcatgatgtatcatgcaaaatagttttcatcatgtcattat |
39355305 |
T |
|
| Q |
212 |
tggtaagcgctgatgtcatgtaggtgcaatatat |
245 |
Q |
| |
|
||||||| || |||||||||| |||||||||| |
|
|
| T |
39355306 |
tggtaagtgccgatgtcatgtgcatgcaatatat |
39355339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University