View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_25 (Length: 250)
Name: NF4197_low_25
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4027629 - 4027393
Alignment:
| Q |
1 |
tgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacacttatgtagaaatcattgtataatagaactaaatg |
100 |
Q |
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| T |
4027629 |
tgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacacttatgtagaaatcattgtataatagaactaaata |
4027530 |
T |
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| Q |
101 |
ttaatttgcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatttctcatgtgtaggtcagagggactatgacta |
200 |
Q |
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| T |
4027529 |
ttaatttgcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatttctcatgtgtaggtcagagggactatgacta |
4027430 |
T |
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| Q |
201 |
ataagcttttatgagttttaacaacttagaattgcct |
237 |
Q |
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| T |
4027429 |
ataagcttttatgagttttaacaacttagaattgcct |
4027393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 3951254 - 3951483
Alignment:
| Q |
14 |
aagtaagaccaaaacctttttgtgaccttcct---tatattctatgtcctgcacactt--atgtagaaatcattgtataatagaactaaatgttaatt-t |
107 |
Q |
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| T |
3951254 |
aagtaagacaaaaacttttttgtgaccttcttccatatatataatgtcctgcacacttttatgcagaaaccgttgtataataatactaaaaatttactct |
3951353 |
T |
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| Q |
108 |
gcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatt--tctcatgtgtaggtcagagggactatgactaataag |
205 |
Q |
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| T |
3951354 |
gcagaaattagagtaaact--cattttgttccttaaagtcaagaattgggacttgaaaacttcgtcacacgtgtagctcggagggattttaaccagtaaa |
3951451 |
T |
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| Q |
206 |
cttttatgagttttaacaacttagaattgcct |
237 |
Q |
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| T |
3951452 |
cttttatgagttttaacaacttagagttgcct |
3951483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 4013184 - 4013094
Alignment:
| Q |
149 |
agaattgggacttgaaaaatttctca--tgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaattgcct |
237 |
Q |
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| T |
4013184 |
agaattgggacttgaaaaaatgctcacatgtgtagctttgagagattatgactaataagcttttatgagttttaatgacttagaattgcct |
4013094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3990653 - 3990563
Alignment:
| Q |
1 |
tgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacac--ttatgta-gaaatcattgtataatag |
91 |
Q |
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| T |
3990653 |
tgtatgagctttgaagaaagaccaaaacttttttgtgaact---ttatattctctgtcttgcacacttttatgcaggaaatcattgtataatag |
3990563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 3990312 - 3990265
Alignment:
| Q |
187 |
agggactatgactaataagcttttatgagttttaacaacttagaattgc |
235 |
Q |
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| T |
3990312 |
agggattatgactaataaacttttatgagtcttaac-acttagaattgc |
3990265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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