View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_27 (Length: 241)
Name: NF4197_low_27
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 2095136 - 2095303
Alignment:
| Q |
24 |
ttaatttgatatttgaatcgttattcatatctcatttctaagtaacaacacattaataatgcttttctccaccatatacgtgtactctcatacatgtact |
123 |
Q |
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| T |
2095136 |
ttaatttgttatttgaatggttattcatatctcatttttaagtaacaacacattaataatgcttttctccaccatatacgtgtactctcatacatgtact |
2095235 |
T |
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| Q |
124 |
aacatacgtgtagaagcagcatgcatatatggccaaaatagtgacaatatatgacagacaagtgtaaa |
191 |
Q |
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| T |
2095236 |
cacatacgtgtagaagcagcatgcatatatggccaaaatagtgacaatatataacagacacgtgtaaa |
2095303 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 1557964 - 1557932
Alignment:
| Q |
152 |
atggccaaaatagtgacaatatatgacagacaa |
184 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
1557964 |
atggtcaaaatagtgacaatatatgacagacaa |
1557932 |
T |
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