View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_3 (Length: 578)
Name: NF4197_low_3
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_3 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Complemental strand, 28102133 - 28101581
Alignment:
| Q |
19 |
aactgagaggtcgtcattcctcagtgttgcctctgcatctatctttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatacta |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102133 |
aactgagaggtcgtcattcctcagtgttgcctctgcatctatctttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatacta |
28102034 |
T |
|
| Q |
119 |
ctatgtatgctgatttgagtactgataagataccttttaccacaacacacaactctaagacaccaacagctgcagcagttaagagtgttcaaattttgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28102033 |
ctatgtatgctgatttgagtactgataagataccttttaccacaacacacaactctaagacaccaacagctgcagcagttaagagtgttcaaattttgaa |
28101934 |
T |
|
| Q |
219 |
gcaattttggggagatgtggaggatggtgactctgacactgaagacctcactgttatgcaaacaggtgctgatcagtatttatgagtgacaccgaaacag |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
28101933 |
gcaattttggggagatgtggaggatggtgactctgacactgaagacctcactgttatgcaaacaggtgctgatcagtatttgtgagtgacactgaaacag |
28101834 |
T |
|
| Q |
319 |
ttggcaaagtcaagcgtggcaagaagaataaaaaacagaaaagccccaagtctgtggctgaagcaagttctgctagaataaatactagatccaagaaaaa |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28101833 |
ttggcaaagtcaagcgtggcaagaagaataaaaaacagaaaagccccaagtctgtggctgaagcaagttctgctagaataaatactagatccaagaaaaa |
28101734 |
T |
|
| Q |
419 |
tctcaatatcaacacatcctaatgatacagtttgcgtggaacctcgtaagcattggaaaacatgactttatgtttctaggcatagtcatttaacacatat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28101733 |
tctcaatatcaacacatcctaatgatacagtttgcgtggaacctcgtaagcattggaaaacatgactttatgtttctaggcatagtcatttaacacatat |
28101634 |
T |
|
| Q |
519 |
ggagtgcttggttagcccacataaatgtttgagtttttaggagctttcatctg |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28101633 |
ggagtgcttggttagcccacataaatgtttgagtttttaggagctttcatctg |
28101581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 36905870 - 36906424
Alignment:
| Q |
19 |
aactgagaggtcgtcattcctcagtgttgcctctgcatctatct-ttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatact |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |
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| T |
36905870 |
aactgagaggtcgtcattccttagtgttgcctttgcatacatctcttcagcttgtgatccttgtttactgagaccacacctaatgcttgttccatatact |
36905969 |
T |
|
| Q |
118 |
actatgtatgctgatttgagtactgataagataccttttaccacaacacacaactctaagacaccaacagctgcagcagttaagagtgttcaaattttga |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
36905970 |
actatgtatgctgaattgagtactgataagagaccttttaccacaacatacaactctaagacaccaacagctgcagcacttaagagtgtccaaattttga |
36906069 |
T |
|
| Q |
218 |
agcaattttggggagatgtggaggatggtgactctgacactgaagacctcactgttatgcaaacaggtgctgatcagtattta-tgagtgacaccgaaac |
316 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
36906070 |
agcaattttggggagatgtggagggtgatgactctgacactgaagacctcaccattatgcaaacaggtgttgatcagtattcggtgagtgacacttaaac |
36906169 |
T |
|
| Q |
317 |
agttggcaaagtcaagcgtggcaagaagaataaaaaacagaaaagccccaagtctgtggctgaagcaagttctgctagaataaatactagatccaagaaa |
416 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36906170 |
agttggcaaagtcaagtgtggcaagaagaattaaaaacagaagagccccaagtctatggctgaagcaagttctgctagaataaatacaagatccaagaaa |
36906269 |
T |
|
| Q |
417 |
aatctcaatatcaacacatcctaatgatacagtttgcgtggaacctcgtaagcattggaaaacatgactttatgtttctaggcatagtcatttaacacat |
516 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36906270 |
aatctcaatatcaccacatcctaatgaaaccgtttgtgtggaacctcatagacattggaaaacatgactttatgtttctaggcagagtcatttaacacaa |
36906369 |
T |
|
| Q |
517 |
atggagtgcttggttagcccacataaatgtttgagtttttaggagctttcatctg |
571 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
36906370 |
atggagggcttggttagcccacataaatgtttgagtctttaggagctttcttctg |
36906424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 371 - 571
Target Start/End: Complemental strand, 3248533 - 3248332
Alignment:
| Q |
371 |
tgtggctgaagcaagttctgctagaataaatactagatccaagaaaaatctcaatatcaacacatcctaatgatacagtttgcgtggaacctcgtaagca |
470 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| || ||||| |||||| ||| || ||| |
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|
| T |
3248533 |
tgtggctgaagcaagttctgctagaaaaaatacaagatccaagaaaaattccaatatcaacacatcctaatgaaactgtttgtgtggaatctcatatgca |
3248434 |
T |
|
| Q |
471 |
ttggaaaacatgactttatgtttctag-gcatagtcatttaacacatatggagtgcttggttagcccacataaatgtttgagtttttaggagctttcatc |
569 |
Q |
| |
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|||||||||| |||||||||||||||| ||| |||||||||||| | || ||| |||||||||| | ||||||||| |||||||||||||||||||||| |
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| T |
3248433 |
ttggaaaacaggactttatgtttctagagcagagtcatttaacataaatagaggacttggttagcactcataaatgtctgagtttttaggagctttcatc |
3248334 |
T |
|
| Q |
570 |
tg |
571 |
Q |
| |
|
|| |
|
|
| T |
3248333 |
tg |
3248332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 3248791 - 3248645
Alignment:
| Q |
33 |
cattcctcagtgttgcctctgcatctatct-ttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctga |
131 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
3248791 |
cattcctcagtgttgcctctgcatccatctcttcagcttgcgatccttgtgaactgagaccacgcctaatgcctgttccatatactactatgtatgctga |
3248692 |
T |
|
| Q |
132 |
tttgagtactgataagataccttttaccacaacacacaactctaaga |
178 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |||| |
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| T |
3248691 |
gttgagtactgacaagagaccttttaccacaacacacaactcaaaga |
3248645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 3248648 - 3248571
Alignment:
| Q |
199 |
aagagtgttcaaattttgaagcaattttggggagatgtggaggatggtgactctgacactgaagacctcactgttatg |
276 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3248648 |
aagagtgtccaaattttgaagcaattttggggagatgtggaggatgatgactctgacactgaagacctcactgttatg |
3248571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 278 - 571
Target Start/End: Complemental strand, 35554359 - 35554067
Alignment:
| Q |
278 |
aaacaggtgctgatcagtattta-tgagtgacaccgaaacagttggcaaagtcaagcgtggcaagaagaataaaaaacagaaaagccccaagtctgtggc |
376 |
Q |
| |
|
|||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35554359 |
aaacaggtgctgatcagtatttgctttgcgacactgaaacagttggcaaagtcaagcgtggcaagaagaataaaaaacagaaaagccccaagtctatggc |
35554260 |
T |
|
| Q |
377 |
tgaagcaagttctgctagaataaatactagatccaagaaaaatctcaatatcaacacatcctaatgatacagtttgcgt-ggaacctcgtaagcattgga |
475 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||| || ||| |||| || ||| |||| |
|
|
| T |
35554259 |
tgaagcaagttctgctagaataaatacaagatccaagaaaaatctcaatatca--ccatcctaatgaaaccgtttgtgtgggaccctcataggcaatgga |
35554162 |
T |
|
| Q |
476 |
aaacatgactttatgtttctaggcatagtcatttaacacatatggagtgcttggttagcccacataaatgtttgagtttttaggagctttcatctg |
571 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
35554161 |
aaacatggc-ttatgtttctaggcagagtcatttaacacaaatggagggcttggttagcccacataaatgtttgagtctttagaagctttcatctg |
35554067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 74317 - 74222
Alignment:
| Q |
80 |
gtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctgatttgagtactgataagataccttttaccacaacacacaactcta |
175 |
Q |
| |
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|||||||||||||| || ||||||| ||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
74317 |
gtgaactgagaccaagcagaatgcatcttccatatactactatgtatggtgagttcagtactgataagatgccttttaccacaacacacaactcta |
74222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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