View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4197_low_30 (Length: 224)
Name: NF4197_low_30
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_30 |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 34645918 - 34645700
Alignment:
| Q |
6 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34645918 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccatatatcttagttggaggggtaccaactgaataggtcat |
34645819 |
T |
|
| Q |
106 |
gagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34645818 |
gagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgca |
34645719 |
T |
|
| Q |
206 |
tcgacaaagtgttggtatt |
224 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
34645718 |
tcgacaaagtgttggtatt |
34645700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 34665612 - 34665394
Alignment:
| Q |
6 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcat |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34665612 |
aacattgttcacaaggctcacattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcat |
34665513 |
T |
|
| Q |
106 |
gagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgca |
205 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34665512 |
gagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgca |
34665413 |
T |
|
| Q |
206 |
tcgacaaagtgttggtatt |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34665412 |
tcgacaaagtgttggtatt |
34665394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 19649629 - 19649833
Alignment:
| Q |
8 |
cattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatga |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||||| |||||||| ||||| ||||| | |
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|
| T |
19649629 |
cattgttcacaaggcttacattgaagccaaacaatgtcactacctgtatcaacaacaccatatacattaaacggaggtgtaccaaccgaataagtcatca |
19649728 |
T |
|
| Q |
108 |
gataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgcatc |
207 |
Q |
| |
|
||| |||| | || | ||| ||||||||||||||| | | | ||||||||||| ||| ||||||||||||||||||| |||||||| |||| |
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|
| T |
19649729 |
aatactcacctccattgacatatacggttgattcaggtgtattggagagggaatctttaaataaacgattggcacgattgatggaccgacgtgcagcatt |
19649828 |
T |
|
| Q |
208 |
gacaa |
212 |
Q |
| |
|
||||| |
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|
| T |
19649829 |
gacaa |
19649833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 45645114 - 45644907
Alignment:
| Q |
6 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatat-cttagttggaggggtaccaactgaataggtca |
104 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||| |||||||||||| ||||| ||| |
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|
| T |
45645114 |
aacattgtttacaaggctcgcattgaagccaaacaatgtcactacctgtatcgataataccatataaacttaaatggtggggtaccaactcaatagttca |
45645015 |
T |
|
| Q |
105 |
tgagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgc |
204 |
Q |
| |
|
|||||||| ||| ||| |||||| |||||||||||||||||||||| | ||||| |||| ||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
45645014 |
tgagataagaacctgtattggggatcacagttgattcaggtgtacttgcgagagaatttttatagaaatgattgacacgaatgatggaacgatgtgctgc |
45644915 |
T |
|
| Q |
205 |
atcgacaa |
212 |
Q |
| |
|
|| ||||| |
|
|
| T |
45644914 |
attgacaa |
45644907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 1390194 - 1390136
Alignment:
| Q |
13 |
ttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtata |
71 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
1390194 |
ttcacaaggcttacattgaagccaaaccatgtcactacctgtatcaacaataccatata |
1390136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 14182852 - 14182645
Alignment:
| Q |
17 |
caaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagataaccac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||| ||||||||||||||||||||||||||||| | | |
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|
| T |
14182852 |
caaggctcgcattgaagccaaacaatgtcactacctgtatcagcaatgccatataacttaaatggtggggtaccaactgaataggtcatgagatactcgc |
14182753 |
T |
|
| Q |
117 |
ccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgcatcgacaaagtg |
216 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||||| | | ||| |||||||||||||||||||||| ||||| ||||| |||| ||||| || |
|
|
| T |
14182752 |
catgatcggggattacagttgattgaggtgtgtttgtgagggcagttttgtagaaatgattggcacgattgatagaacggcgtgcggcattgacaatatg |
14182653 |
T |
|
| Q |
217 |
ttggtatt |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
14182652 |
ttggtatt |
14182645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 40717622 - 40717422
Alignment:
| Q |
6 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||| |||| ||| ||| |||||| |||||||||||| |
|
|
| T |
40717622 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtgtcaacaatgccatataacttaaatggtgggctaccaattgaataggtcat |
40717523 |
T |
|
| Q |
106 |
gagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgca |
205 |
Q |
| |
|
||||| |||| |||| ||||||||| |||||||||||| |||||| |||| ||| |||||||||| ||||| ||||| ||||||||||| ||| |
|
|
| T |
40717522 |
cagatactcaccattatcagggattacatttgattcaggtgaacttgtaagtgaatttttgtagaaatgattagcacggttgatagaacgacgtgcggca |
40717423 |
T |
|
| Q |
206 |
t |
206 |
Q |
| |
|
| |
|
|
| T |
40717422 |
t |
40717422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 14191803 - 14191585
Alignment:
| Q |
6 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcat |
105 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||| |||||||| |||||| ||||||| |||| |||| ||| || |||||||||||||||||||| |
|
|
| T |
14191803 |
aacattcttgacaaggctcacattgaagccaaacaatatcactaccggtatcaacaataccatataacttaaatggtggtgtaccaactgaataggtcat |
14191704 |
T |
|
| Q |
106 |
gagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgca |
205 |
Q |
| |
|
||||| | || ||||||||||||||||||||| |||| || ||| |||| ||| | |||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
14191703 |
tagatactcgccgatatcggggattacagttgattgaggtatatttgcaagggaatatttgtaaaaatgattggcacggttgatggaacgacgtgcggca |
14191604 |
T |
|
| Q |
206 |
tcgacaaagtgttggtatt |
224 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
14191603 |
tcgacaaaatattggtatt |
14191585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 14200817 - 14200625
Alignment:
| Q |
6 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcat |
105 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| |||||||||||||||| ||| || ||| |||| ||| || ||||||| |||||| |||| |
|
|
| T |
14200817 |
aacattgtttacaaggctcacattgaagccaaacaaggtcactacctgtatcaacaaagccaaataccttaaatggtggagtaccaattgaataactcat |
14200718 |
T |
|
| Q |
106 |
gagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacg |
198 |
Q |
| |
|
|||||| |||| |||| | | |||||||||||| ||||||||| ||| ||||| ||| ||||||| ||| |||| |||||||||||||| |
|
|
| T |
14200717 |
gagatactcacctttatcagagtttacagttgattgaggtgtactagtgagagaatatttgtagaaatggttgacacggttgatggaacgacg |
14200625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 34302576 - 34302358
Alignment:
| Q |
6 |
aacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcat |
105 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||| |||| ||||| |||||||||||| |||| |
|
|
| T |
34302576 |
aacattgttcacaaggctcgcattgtagccatacaatgtcactacctgtatcgacaataccatatgacttaattggtggggtgccaactgaatagctcat |
34302477 |
T |
|
| Q |
106 |
gagataaccacccctatcggggattacagttgattcaggtgtacttgtgtcagaatctttaaagaaatgattggcacgattgatggaacgacgtgctgca |
205 |
Q |
| |
|
|| |||| ||||| || | |||||||||||||||||||||||||| ||||| ||| | |||||| |||||||||| |||||| || ||||| |
|
|
| T |
34302476 |
gatataatcaccctcataagagattacagttgattcaggtgtacttgcaagagaatttttgttagagtgattgacacgattgatcgaacgatgtactgca |
34302377 |
T |
|
| Q |
206 |
tcgacaaagtgttggtatt |
224 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
34302376 |
tcgacaacatgttggtatt |
34302358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 28402735 - 28402694
Alignment:
| Q |
16 |
acaaggctcgcattgaagccaaacaatgtcactacctgtatc |
57 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
28402735 |
acaaggctggcattgaagccaaactatgttactacctgtatc |
28402694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 45396750 - 45396791
Alignment:
| Q |
16 |
acaaggctcgcattgaagccaaacaatgtcactacctgtatc |
57 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
45396750 |
acaaggctggcattgaagccaaactatgttactacctgtatc |
45396791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 44491605 - 44491645
Alignment:
| Q |
17 |
caaggctcgcattgaagccaaacaatgtcactacctgtatc |
57 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
44491605 |
caaggcttgcattgaagccaaactaagtcactacctgtatc |
44491645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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