View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_8 (Length: 415)
Name: NF4197_low_8
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 31733420 - 31733328
Alignment:
| Q |
323 |
aaatgatgggcaaccatttttcaagtctcatgtaattcagtatttattttcttaataagagcgtctccaaatattatcatgttaaacaggttt |
415 |
Q |
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| T |
31733420 |
aaattatgggcaaccatttttcaagtctcatgtaattgagcatttattttcttaataagagcgtctccaaatattatcatgttaaacaggttt |
31733328 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 31733589 - 31733544
Alignment:
| Q |
18 |
tcttgatgatttgatttgatgcacaactttttattgatctccatct |
63 |
Q |
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| T |
31733589 |
tcttgatgatttgatttgatgcacaactttttattgatctccatct |
31733544 |
T |
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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 32849588 - 32849679
Alignment:
| Q |
118 |
tattgttatgtttgtatgaaa-taatgtaaacaaaagtttgaaaggtacatgacgcaagatttctaatgttcatgacaaattttcttctatta |
209 |
Q |
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| T |
32849588 |
tattgttatgtttctatgaaaataatgtaaacaaa-gtttgaaaggtacttaacgcaagatttctaatgttcatggcaaattttcttctatta |
32849679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 32849845 - 32849895
Alignment:
| Q |
330 |
gggcaaccatttttcaagtctcatgtaattcagtatttattttcttaataa |
380 |
Q |
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| T |
32849845 |
gggcaaccatttttcaagtctcatgtatttgagcatttattttcttaataa |
32849895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 32849741 - 32849786
Alignment:
| Q |
288 |
ttatgacacaaccaaaccgaaataattaagctacaaaatgatgggc |
333 |
Q |
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| T |
32849741 |
ttatgacacaaccaaaccgaaatagttaagcttcaaaatgatgggc |
32849786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 32848597 - 32848631
Alignment:
| Q |
29 |
tgatttgatgcacaactttttattgatctccatct |
63 |
Q |
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| T |
32848597 |
tgatttgatgtacaactttttattgatctccatct |
32848631 |
T |
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