View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4197_low_9 (Length: 405)
Name: NF4197_low_9
Description: NF4197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4197_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Original strand, 21151579 - 21151955
Alignment:
| Q |
15 |
gtaatttgtctcttaattgatacaatcatgtcaagattaaaatctaaacatcctctgatatagatagtgatattcatgtttcaaaattctggttttatgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21151579 |
gtaatttgtctcttaattgatacaatcatgtcaagattaaaatctaaacatcctctgatatagatagtgatattcatgtttcaagattctggttttatgt |
21151678 |
T |
|
| Q |
115 |
atacttgtatgggatcaagtatcgatttttgttgatagaatgtgtgaattgaaatggtagatagagtaaaatactattgaatagtagagtatattggtaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21151679 |
atacttgtatgggatcaagtatcgatttttgttgatagaatgtgtgaattgaaatggtagatagagtaaaatactattgaatagtagagtatattggtaa |
21151778 |
T |
|
| Q |
215 |
gtttgatttgagaaacactaaagtcacacattgcttagtttacacacattgattagttttcaatgttatataaagagtgttcatgtctctttccaaagca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
21151779 |
gtttgatttgagaaacactaaagtcacacattgcttagtttacacacattgattagttttcaatgttatataaaga-tgttcatgtctcattccaaagca |
21151877 |
T |
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| Q |
315 |
catcaaaactccacgcatttctaagttttctttctcctgctcgacgtcaatgcactttcgagtcacttctctcatttc |
392 |
Q |
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| T |
21151878 |
catcaaaactccacgcatttctaagttttctttctcctactcgacgtcaatgcactttcgagtcacttctctcatttc |
21151955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 7583889 - 7583953
Alignment:
| Q |
248 |
cttagtttacacacattgattagttttcaatgttatataaagagtgttcatgtctctttccaaag |
312 |
Q |
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| T |
7583889 |
cttagtttatacacattggttagtttccaacattatataaggagtgttcacgactctttccaaag |
7583953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 30613461 - 30613358
Alignment:
| Q |
221 |
tttgagaaacactaaagtcacacattgcttagtttacacacattgattagttttcaatgttatataaagagtgttcatgtctctttccaaagcacatcaa |
320 |
Q |
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||||| ||||| |||||||| ||||||||||||||||||||| || ||| ||| || | |||||||| |||||||||||||| ||| |||||| |||||| |
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| T |
30613461 |
tttgaaaaacattaaagtcatacattgcttagtttacacacactggttaatttccagtattatataaggagtgttcatgtcttttttcaaagcgcatcaa |
30613362 |
T |
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| Q |
321 |
aact |
324 |
Q |
| |
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|||| |
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| T |
30613361 |
aact |
30613358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 8977470 - 8977406
Alignment:
| Q |
248 |
cttagtttacacacattgattagttttcaatgttatataaagagtgttcatgtctctttccaaag |
312 |
Q |
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| T |
8977470 |
cttagtttatacacattggttagtttccaacattatataaggagtgttcacgactctttccaaag |
8977406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 32616300 - 32616338
Alignment:
| Q |
267 |
ttagttttcaatgttatataaagagtgttcatgtctctt |
305 |
Q |
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| T |
32616300 |
ttagttttcaacgttatataaagagtgttcatgactctt |
32616338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 11769663 - 11769580
Alignment:
| Q |
220 |
atttgagaaacactaaagtcacacattgcttagtttacacacattgattagttttcaatgttatataaagagtgttcatgtctcttt |
306 |
Q |
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|||||| ||| ||||||||| ||||||||||| ||| ||||||| ||||||||||| |||| ||| ||||| ||||| |||||| |
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| T |
11769663 |
atttgaaaaatactaaagtctcacattgctta---tacccacattggttagttttcaacattatgtaaggagtgctcatgactcttt |
11769580 |
T |
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