View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4198_low_1 (Length: 467)
Name: NF4198_low_1
Description: NF4198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4198_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 24181029 - 24181310
Alignment:
| Q |
24 |
agcaacaaccaccatcatcctccatggttgtttcttacaaagaatgtctcaaaaatcatgctgcatccctaggtggacatgcacttgatggatgtggtga |
123 |
Q |
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| T |
24181029 |
agcaacaaccaccatcatcatccatggttgtttcttacaaagaatgtctcaaaaatcatgctgcatccctaggtggacatgcacttgatggatgtggtga |
24181128 |
T |
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| Q |
124 |
attcatgccaccatcatctctcaatcccaatgaccctagatccctcaaatgtgctgcttgtggctgtcaccggaatttccaccgccgtgaaccacaagag |
223 |
Q |
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| T |
24181129 |
attcatgccaccatcatctctcaatcccaatgaccctagatccctcaaatgtgctgcttgtggctgtcaccggaatttccaccgccgtgagccacaagag |
24181228 |
T |
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| Q |
224 |
catatcctcaccacgaccacttccaccaccgctacggcaacagccagcgcgaaaaacagtccaccttttcttaactgtatct |
305 |
Q |
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| T |
24181229 |
catatcctcaccacgaccacttccaccaccgctacggcaacagccagcgcgaaaaacagtccaccttttcttaactgtatct |
24181310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 369 - 467
Target Start/End: Original strand, 24181374 - 24181472
Alignment:
| Q |
369 |
gtggtccaattagtcaaagcacaagcccaagtcaaagtacaagcccaagtcatagcccaagtccaatttcaagcccatcatcaccaccaccactctcac |
467 |
Q |
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| T |
24181374 |
gtggtccaattagtcaaagcacaagcccaagtcaaagtacaagcccaagtcatagcccaagtccaatttcaagcccatcatcaccaccaccactctcac |
24181472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 2494823 - 2494658
Alignment:
| Q |
59 |
tacaaagaatgtctcaaaaatcatgctgcatccctaggtggacatgcacttgatggatgtggtgaattcatgccaccatcatctctcaatcccaa-tgac |
157 |
Q |
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| T |
2494823 |
tacaaagaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggctgtggtgaattcatgacatcaccaac-agcaacaccaaccgac |
2494725 |
T |
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| Q |
158 |
cctagatccctcaaatgtgctgcttgtggctgtcaccggaatttccaccgccgtgaaccacaagagc |
224 |
Q |
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| T |
2494724 |
ccaacatccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagc |
2494658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 3684095 - 3683929
Alignment:
| Q |
50 |
gttgtttcttacaaagaatgtctcaaaaatcatgctgcatccctaggtggacatgcacttgatggatgtggtgaattcatgccaccatcatctctcaatc |
149 |
Q |
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|||||| |||||||||||||||||||||| || | ||| |||||||||| ||||| || || || ||| |||||||||||||| || || | || |
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| T |
3684095 |
gttgttacttacaaagaatgtctcaaaaaccacgtggcaaccctaggtggtcatgccctagacggttgttgtgaattcatgccatcaccaaccgccacct |
3683996 |
T |
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| Q |
150 |
ccaatgaccctagatccctcaaatgtgctgcttgtggctgtcaccggaatttccaccgccgtgaacc |
216 |
Q |
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| T |
3683995 |
ccgatgaccctgcctccataaaatgtgccgcatgtggttgtcaccggaatttccaccgccgtgaacc |
3683929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 46301127 - 46301092
Alignment:
| Q |
173 |
tgtgctgcttgtggctgtcaccggaatttccaccgc |
208 |
Q |
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| T |
46301127 |
tgtgctgcttgtggctgtcaccggaacttccaccgc |
46301092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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