View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4198_low_3 (Length: 216)
Name: NF4198_low_3
Description: NF4198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4198_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 38538175 - 38538347
Alignment:
| Q |
17 |
tgaaactagagatcagagatatatatgaacaacttagttggacataatatgatggacatggactgatcactgatgcagtgcagaatgtgacggtgaattt |
116 |
Q |
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| T |
38538175 |
tgaaactagagatcagagatatgaacaacttacttagttggacataatatgatggacatggactgatcactgatgcagtgcagaatgtgacggtgaattt |
38538274 |
T |
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| Q |
117 |
attagtacaaagttagttgaacccgtgagccatatgcctcataaataattataataacattagactttgtaca |
189 |
Q |
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| T |
38538275 |
atcagtacaaagttagttgaacccgtgagccatatgcctcataaataatgataataacattagactttgtaca |
38538347 |
T |
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Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 38560393 - 38560565
Alignment:
| Q |
17 |
tgaaactagagatcagagatatatatgaacaacttagttggacataatatgatggacatggactgatcactgatgcagtgcagaatgtgacggtgaattt |
116 |
Q |
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|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38560393 |
tgaaactagagatcagagatatgaacaacttacttagttggacataatatgatggacatggactgatcactgatgcagtgcagaatgtgacggtgaattt |
38560492 |
T |
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| Q |
117 |
attagtacaaagttagttgaacccgtgagccatatgcctcataaataattataataacattagactttgtaca |
189 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38560493 |
atcagtacaaagttagttgaacccgtgagccatatgcctcataaataatgataataacattagactttgtaca |
38560565 |
T |
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