View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4199_high_3 (Length: 311)
Name: NF4199_high_3
Description: NF4199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4199_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 38831349 - 38831644
Alignment:
| Q |
2 |
aaaacatgagaaacacttccaacaaactgtttcagtatctcccaattcccacctctagcagcagcatgaacacctctattcaccatatccttctcaaaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38831349 |
aaaacatgagaaacacttccaacaaactgtttcagtatctcccaattcccacctctagcagcagcatgaacacctctattcaccatatccttctcaaaaa |
38831448 |
T |
|
| Q |
102 |
cctcatccaaaaccaattcatcaccattcttcaacaatgcataatcaaacaaaatcttaaaaacctcagaacttttacttctagctgcagcatacaaaat |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38831449 |
cctcatccaaaaccaattcatcactattcttcaacaatgcataatcaaacaaaatcttaaaaacctcagaacttttacttctagctgcagcatacaaaat |
38831548 |
T |
|
| Q |
202 |
atcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctcaacaattcacaaacaaattccatatcaccagctgaagcagcagt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38831549 |
atcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctcaacaattcacaaacaaattccatatcaccagctgaagcagcagt |
38831644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 34397296 - 34397163
Alignment:
| Q |
164 |
acctcagaacttttacttctagctgcagcatacaaaatatcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctcaacaattcac |
263 |
Q |
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||||||||| | ||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| | |||| ||||| |||||||||||| |
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| T |
34397296 |
acctcagaattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcat |
34397197 |
T |
|
| Q |
264 |
aaacaaattccatatcaccagctgaagcagcagt |
297 |
Q |
| |
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||||||| |||| ||||||||| ||||||||||| |
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| T |
34397196 |
aaacaaactccaaatcaccagcagaagcagcagt |
34397163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 34397443 - 34397407
Alignment:
| Q |
35 |
agtatctcccaattcccacctctagcagcagcatgaa |
71 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||| |
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| T |
34397443 |
agtatttcccaattccctcctctagcagcagcatgaa |
34397407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 7996913 - 7996949
Alignment:
| Q |
45 |
aattcccacctctagcagcagcatgaacacctctatt |
81 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||| |
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| T |
7996913 |
aattaccacctctagcagcagcatgaacagctctatt |
7996949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 8021890 - 8021854
Alignment:
| Q |
45 |
aattcccacctctagcagcagcatgaacacctctatt |
81 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||| |
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|
| T |
8021890 |
aattaccacctctagcagcagcatgaacagctctatt |
8021854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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