View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4199_low_1 (Length: 313)
Name: NF4199_low_1
Description: NF4199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4199_low_1 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 52 - 208
Target Start/End: Original strand, 149715 - 149871
Alignment:
| Q |
52 |
attgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttttgaaacccaatttgaaa |
151 |
Q |
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| T |
149715 |
attgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttttgaaacccaatttgaaa |
149814 |
T |
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| Q |
152 |
catccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
208 |
Q |
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| T |
149815 |
catccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
149871 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 149943 - 149976
Alignment:
| Q |
280 |
ccttcaccttcaaatctacctcaacaacaacctc |
313 |
Q |
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| T |
149943 |
ccttcaccttcaaatctacctcaacaacaacctc |
149976 |
T |
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