View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4200_high_10 (Length: 290)
Name: NF4200_high_10
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 9503225 - 9502978
Alignment:
| Q |
27 |
ttaattattttctatcattgaaattcagatatttatatcaactctaggatactcttaaatcataaatgattattaattatccaacagaagttttggttag |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9503225 |
ttaattattttctatcattgaaattcagatatttatatcaactctaggatactcttaaatcataaatgattattaattatccaacagaagttttggttag |
9503126 |
T |
|
| Q |
127 |
gaaattctactactcctagtatgttacttagggagaattagaaagtacaattacatttctttcccaatcccaatgtggcataaagttgacaataggaccc |
226 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9503125 |
gaaattctgctactcctagtatgttacttatggagaattagaaagtacaattacatttctttcccaatcccaatgtggcataaagttgacaataggaccc |
9503026 |
T |
|
| Q |
227 |
acgagacattatcacacataagttacacgatgacacgcacattcatcat |
275 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9503025 |
acgagacattatcac-cataagttacacgatgacacgcacattcatcat |
9502978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University