View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_high_13 (Length: 242)
Name: NF4200_high_13
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_high_13 |
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| [»] scaffold0305 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 8297143 - 8296908
Alignment:
| Q |
6 |
aatttctacaccccagttttgaatccacaaaatttcctcttggaaaatatctatctttgaaaactcctgcaactatagtatcatggttggtttctaatct |
105 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||| || |
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| T |
8297143 |
aatttctacaccccagttttgaatccacaaaattccctcttaaaaaatatctagttttgaaaactcttgcaagtatagtatcatggttggtttctaacct |
8297044 |
T |
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| Q |
106 |
ccaaccttgcttcccaagcattgccaaattgaacccatacctatatattctatccttaacgtcagcttctcccaccttaacaattgataccttttccgtt |
205 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||| ||||||||||| |||| |
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| T |
8297043 |
ccaaccttgcttcccaagcattgtcaaattgaacccatacctctatattttatcctcaacgttagcttctcccaccttaacagttgatacctttcgcgtt |
8296944 |
T |
|
| Q |
206 |
ttgtctatttgatccccaccaaaacaaattcaacaa |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8296943 |
ttgtctatttgatccccaccaaaacaaattcaacaa |
8296908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 15162266 - 15162383
Alignment:
| Q |
17 |
cccagttttgaatccacaaaatttcctcttggaaaatatctatctttgaaaactcctgcaactatagtatcatggttggtttctaatctccaaccttgct |
116 |
Q |
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|||| ||||| |||||||||||| | | ||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15162266 |
cccaattttgcatccacaaaattccattttgaaaaatatctagctttgaaaactcttgcaactatagtatcatggttggtttctaatct-caaccttgct |
15162364 |
T |
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| Q |
117 |
tcccaagcattgccaaatt |
135 |
Q |
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|||| |||||||||||||| |
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| T |
15162365 |
tccctagcattgccaaatt |
15162383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 18054920 - 18054856
Alignment:
| Q |
74 |
gcaactatagtatcatggttggtttctaatctccaaccttgcttcccaagcattgccaaattgaa |
138 |
Q |
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| T |
18054920 |
gcaactatagtattataattggtttctaatctccaaacttatttccctaacattgccaaattgaa |
18054856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 35055998 - 35056070
Alignment:
| Q |
171 |
cttctcccaccttaac-aattgataccttttccgttttgtctatttgatccccaccaaaacaaattcaacaat |
242 |
Q |
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| T |
35055998 |
cttctcccatcttaaccaatttattccttttccattttgtctattcgacccccaccaaaaagaattcaacaat |
35056070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 14344379 - 14344255
Alignment:
| Q |
17 |
cccagttttgaatccacaaaatttcctcttggaaaatatctatctttgaaaactcctgcaactatagtatcatggttggtttctaatctccaaccttgct |
116 |
Q |
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|||||||||| |||||||||||| ||||||||||| ||||||||||| || ||| || || ||| |||||||||||||||||||||| ||||||| || |
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| T |
14344379 |
cccagttttgcatccacaaaattccctcttggaaagtatctatctttaaacacttttgaaattatgatatcatggttggtttctaatcttcaaccttact |
14344280 |
T |
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| Q |
117 |
tcccaagcattgccaaattgaaccc |
141 |
Q |
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|||| ||||||||||| ||||||| |
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| T |
14344279 |
tccctagcattgccaatatgaaccc |
14344255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 40731706 - 40731823
Alignment:
| Q |
28 |
atccacaaaatttcctcttggaaaatatctatctttgaaaactcctgcaactatagtatcatggttggtttctaatctccaaccttgcttcccaagcatt |
127 |
Q |
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|||||||||||| | | || |||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||| || ||| |
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| T |
40731706 |
atccacaaaattccattttaaaaaatatctagctttgaagactcttgcaactatagtatcatggttggtttataatctccaacctcatttccttagaatt |
40731805 |
T |
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| Q |
128 |
gccaaattgaacccatac |
145 |
Q |
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||||||||||| |||||| |
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| T |
40731806 |
gccaaattgaaaccatac |
40731823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 19734 - 19853
Alignment:
| Q |
19 |
cagttttgaatccacaaaatttcctcttggaaaatatctatctttgaaaactcctgcaactatagtatcatggttggtttctaatctccaaccttgcttc |
118 |
Q |
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|||||||| |||||||||||| |||||| ||| |||||| ||||||| ||| ||||||||||||||||||||| | ||||||||||||||| | || | |
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| T |
19734 |
cagttttgcatccacaaaattccctctttaaaagtatctagctttgaacacttttgcaactatagtatcatggttagattctaatctccaaccatactac |
19833 |
T |
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| Q |
119 |
ccaagcattgccaaattgaa |
138 |
Q |
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| T |
19834 |
catagcattaccaaattgaa |
19853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 30027 - 29969
Alignment:
| Q |
77 |
actatagtatcatggttggtttctaatctccaaccttgcttcccaagcattgccaaatt |
135 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
30027 |
actatagtatcttggttggtttctagcctccaaccttgcttccctagcatacccaaatt |
29969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 30142462 - 30142402
Alignment:
| Q |
34 |
aaaatttcctcttggaaaatatctatctttgaaaactcctgcaactatagtatcatggttg |
94 |
Q |
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|||||||||||||| |||||||||| ||||||| | || |||||| ||| ||||||||||| |
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| T |
30142462 |
aaaatttcctcttgaaaaatatctaactttgaagattcgtgcaacaataatatcatggttg |
30142402 |
T |
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