View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4200_high_14 (Length: 235)

Name: NF4200_high_14
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4200_high_14
NF4200_high_14
[»] chr6 (2 HSPs)
chr6 (4-80)||(9694940-9695017)
chr6 (156-219)||(9695091-9695154)
[»] chr5 (2 HSPs)
chr5 (33-76)||(11408395-11408438)
chr5 (50-79)||(29690850-29690879)
[»] chr8 (1 HSPs)
chr8 (50-80)||(10761312-10761342)
[»] chr4 (3 HSPs)
chr4 (34-75)||(48240736-48240777)
chr4 (38-74)||(18427798-18427834)
chr4 (50-78)||(35647795-35647823)
[»] chr2 (1 HSPs)
chr2 (50-79)||(19253287-19253316)
[»] chr7 (1 HSPs)
chr7 (39-75)||(43565771-43565807)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 9694940 - 9695017
Alignment:
Q  4 actcaaacacgagtgaaagtgtcggtttt-gaactccgattataacgtccgatctaacaattttgacatttttgtcag 80  Q
    |||||||||| |||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||| ||||||||||    
T  9694940 actcaaacacaagtgaaagtgtcggtttttgaactccgatcataacgtccgacctaataattttgacctttttgtcag 9695017  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 9695091 - 9695154
Alignment:
Q  156 ttaactaaagtgactattaataggcatttagaaccctgcacaaggggaatcgaactatatatct 219  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||    
T  9695091 ttaactaaagtgactattgatagtcatttagaaccctgcactaggggaatccaactatatatct 9695154  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 11408438 - 11408395
Alignment:
Q  33 gaactccgattataacgtccgatctaacaattttgacatttttg 76  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  11408438 gaactccgattatgacgttcgatctaacaattttgacatttttg 11408395  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 29690879 - 29690850
Alignment:
Q  50 tccgatctaacaattttgacatttttgtca 79  Q
    ||||||||||||||||||||||||||||||    
T  29690879 tccgatctaacaattttgacatttttgtca 29690850  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Complemental strand, 10761342 - 10761312
Alignment:
Q  50 tccgatctaacaattttgacatttttgtcag 80  Q
    |||||||||||||||||||||||||||||||    
T  10761342 tccgatctaacaattttgacatttttgtcag 10761312  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 48240736 - 48240777
Alignment:
Q  34 aactccgattataacgtccgatctaacaattttgacattttt 75  Q
    ||||||||| |||||||| ||||| |||||||||||||||||    
T  48240736 aactccgatcataacgtctgatcttacaattttgacattttt 48240777  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 18427798 - 18427834
Alignment:
Q  38 ccgattataacgtccgatctaacaattttgacatttt 74  Q
    |||||||| || |||||||||||||||||||||||||    
T  18427798 ccgattatgacatccgatctaacaattttgacatttt 18427834  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 35647823 - 35647795
Alignment:
Q  50 tccgatctaacaattttgacatttttgtc 78  Q
    |||||||||||||||||||||||||||||    
T  35647823 tccgatctaacaattttgacatttttgtc 35647795  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 19253316 - 19253287
Alignment:
Q  50 tccgatctaacaattttgacatttttgtca 79  Q
    ||||||||||||||||||||||||||||||    
T  19253316 tccgatctaacaattttgacatttttgtca 19253287  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 43565771 - 43565807
Alignment:
Q  39 cgattataacgtccgatctaacaattttgacattttt 75  Q
    ||||||||||||||||||||||||||| || ||||||    
T  43565771 cgattataacgtccgatctaacaatttcgatattttt 43565807  T

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