View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_high_5 (Length: 355)
Name: NF4200_high_5
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 47473967 - 47473661
Alignment:
| Q |
11 |
ttatactactatcacaattttacaaagcttcttcgttacaaaggtgtgtatatacaggttgaagcttttggggtgggtgctgctttaagccattaactat |
110 |
Q |
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| T |
47473967 |
ttatactactatcacaattttacaaagctgcttcgttacaaaggtgt--atatacaggttgaagcttttggggtgggtgctgctttaagccattaactat |
47473870 |
T |
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| Q |
111 |
gtatcactgttagattgttggagaacattggtgagcacaaaggatatctggtagggtttatgttgatatttatgaggcacgtacagtggcattgctagat |
210 |
Q |
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| T |
47473869 |
gtatcactgttagattgttggagtacattggggagcacaaaggatatctggtagggtttatgttgatatttatgaggcacgtacagtggcattgctagat |
47473770 |
T |
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| Q |
211 |
cttggttgccgtagaagctctattagtgtctccacctgtccccatgaagaggaacaatcaataatcgaacaaaaaaattgatataaatgaaaatattctc |
310 |
Q |
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| T |
47473769 |
cttggttgccgtagaagctctattagtgtctccacctgtccccatgaagaggaacaatcaataatcgaacaaaaaaattgatataaatgaaaatattctc |
47473670 |
T |
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| Q |
311 |
ccatgtcaa |
319 |
Q |
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| T |
47473669 |
ccatgtcaa |
47473661 |
T |
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