View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_low_1 (Length: 575)
Name: NF4200_low_1
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 43607337 - 43606780
Alignment:
| Q |
1 |
aacgtggcggctttgcaattgcatgatgatgatgtttaacgttaaccttctccagaaaccgtgaacgacggagatatgatgctacccaagcaaaggaaga |
100 |
Q |
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| T |
43607337 |
aacgtggcggctttgcaattgcatgatgatgatgtttaacgttaaccttctccagaaaccgtgaacgacggagatatgatgctacccaagcaaaggaaga |
43607238 |
T |
|
| Q |
101 |
aagcgaggtaataccgaaagcaccggatgtcaaaaatccggcgatggccaaaccaatgacgacagccgcagctaacaaaatggggctgaagaaaatgaac |
200 |
Q |
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| T |
43607237 |
aagcgaggtaataccgaaagcaccggatgtcaaaaatccggcgatggccaaaccaatgacgacagccgcagctaacaaaatggggctgaagaaaatgaac |
43607138 |
T |
|
| Q |
201 |
agaggggtggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagtagcaagtacta |
300 |
Q |
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| T |
43607137 |
agaggggtggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagtagcaagtacta |
43607038 |
T |
|
| Q |
301 |
tgagttgtgaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggttnnnnnnnnnnnnnnnnnnnnngtggtaaccgta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43607037 |
tgagttgtgaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggtt---ctgctgctgctgctgctggtggtaaccgta |
43606941 |
T |
|
| Q |
401 |
gtagtcatccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttcagttcagttcactaggg-nnnnnnngtgacataatg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43606940 |
gtagtcatccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttcagttcagttcactagggtttttttggtgacataatg |
43606841 |
T |
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| Q |
500 |
atgagaaaaatgttagaatttaatttaagtaaggaggtaggaggtgatgacacgtggatat |
560 |
Q |
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| T |
43606840 |
atgagaaaaatgttagaatttaatttaagtaaggaggtaggaggtgatgacacgtggatat |
43606780 |
T |
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