View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_low_11 (Length: 314)
Name: NF4200_low_11
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 13280901 - 13280619
Alignment:
| Q |
13 |
cagaactcaacgggccgtagaaaacaattagtatatcaacatcgagttttctccaagagtgacttcttagactatatatctcataaaaggggtcatgtgt |
112 |
Q |
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| T |
13280901 |
cagaactcaacgggccgtagaaaacaattggtatatcaacatcgagttttctccaagagtgacttcttagactatatatctcataaaaggggtcatgtgt |
13280802 |
T |
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| Q |
113 |
cttaaacatatcttctcgaaaacgcacaacccggatgaccttgtagtcatcactatcatggtcataaccaaacccataaagaaaatgatcaacgaagaca |
212 |
Q |
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| T |
13280801 |
cttaaacatatcttctcgaaaacgcacaacccggatgaccttgtagtcatcactatcatggtcataaccaaacccataaagaaactgatcaacgaagaca |
13280702 |
T |
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| Q |
213 |
ttaggaggtagagactcgggaaggttagaaggaatgacatgaacttcgttagtagttgggttccacaacactatctgtgaaggatc |
298 |
Q |
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| T |
13280701 |
tt---aggtagagactcgggaaggttagaaggaacgacatgaacttcgttagtagttgggttccacaacactatctgtgaaggatc |
13280619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 27724629 - 27724675
Alignment:
| Q |
45 |
atatcaacatcgagttttctccaagagtgacttcttagactatatat |
91 |
Q |
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| T |
27724629 |
atatcaacataaagttttttccaagagttacttcttagactatatat |
27724675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 32642691 - 32642646
Alignment:
| Q |
49 |
caacatcgagttttctccaagagtgacttcttagactatatatctc |
94 |
Q |
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| T |
32642691 |
caacatcaagttttctccaagagttacttcttaaactatatatctc |
32642646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 16487066 - 16487115
Alignment:
| Q |
45 |
atatcaacatcgagttttctccaagagtgacttcttagactatatatctc |
94 |
Q |
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||||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
16487066 |
atatcgacatcaagttttctccaagagttgtttcttagactatatatctc |
16487115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 42782977 - 42782933
Alignment:
| Q |
49 |
caacatcgagttttctccaagagtgacttcttagactatatatct |
93 |
Q |
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| T |
42782977 |
caacatcaagtttcctccaagagttacttcttagactgtatatct |
42782933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 27230572 - 27230628
Alignment:
| Q |
38 |
aattagtatatcaacatcgagttttctccaagagtgacttcttagactatatatctc |
94 |
Q |
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|||| ||||||||||| | |||||||||||||| ||||||||| ||||||||||| |
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| T |
27230572 |
aattggtatatcaacaataatttttctccaagagttacttcttaggctatatatctc |
27230628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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