View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_low_12 (Length: 311)
Name: NF4200_low_12
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 19395532 - 19395234
Alignment:
| Q |
7 |
aatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaatcacannnnnnnatattataaagtaatggtgggacttctttt |
106 |
Q |
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| T |
19395532 |
aatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaatcacatttttttatattataaagtaatggtgggacttcttta |
19395433 |
T |
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| Q |
107 |
aggatagtagtcaaaagaaaggcttttgtttcaggatatagattctgatttatcatgccttcaattgtgttcagtattgaacttgaataagataaaataa |
206 |
Q |
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| T |
19395432 |
aggatagtagtcaaaagaaaagcttttgtttcaggatatagattctgatttatcatgccttcaattgtgttcagtattgaacttgaataagataaaataa |
19395333 |
T |
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| Q |
207 |
ttcaagtggaattagaagttacttacaaccaaatgtaaccaactgattgtgaagagtagctataaaaacaataacttgatgctagtattagagaataat |
305 |
Q |
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| T |
19395332 |
ttcaagtggaattagaagttacttacaaccaaatgtaaccaactgattgtgaagagtagctataaaaacaataacttgatgctagtattagagaataat |
19395234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 18871604 - 18871776
Alignment:
| Q |
7 |
aatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaatcacannnnnnnatattataaagtaatggtgggacttctttt |
106 |
Q |
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| T |
18871604 |
aatgctgtcttaaatccatcaatttgttccaatctcattttctttct-gaaaagtgaattacatttttt--tattataaagtaattgtgagacttattg- |
18871699 |
T |
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| Q |
107 |
aggatagtagtcaaaagaaaggcttttgtttcaggatatagattctgatttatcatgccttcaattgtgttcagtattg |
185 |
Q |
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| T |
18871700 |
aggatagtagtcaaaagaaaagcttttgtttcaagata--gattctgatttatcatgccttcaattgtgttctgtattg |
18871776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 18106020 - 18105979
Alignment:
| Q |
144 |
atagattctgatttatcatgccttcaattgtgttcagtattg |
185 |
Q |
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| T |
18106020 |
atagattatgatttatcatgccttcaattgtgttctgtattg |
18105979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 19383038 - 19383005
Alignment:
| Q |
184 |
tgaacttgaataagataaaataattcaagtggaa |
217 |
Q |
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| T |
19383038 |
tgaacttgaataagataaaataattcaagtggaa |
19383005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 19428088 - 19428052
Alignment:
| Q |
183 |
ttgaacttgaataagataaaataattcaagtggaatt |
219 |
Q |
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| T |
19428088 |
ttgaacttgaataatataaaataattcaagtggaatt |
19428052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 19383129 - 19383077
Alignment:
| Q |
120 |
aaagaaaggcttttgtttcaggatatagattctgatttatcatgccttcaattgt |
174 |
Q |
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||||||| |||||||||||| |||| ||||||||||||||||| |||||||||| |
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| T |
19383129 |
aaagaaaagcttttgtttcaagata--gattctgatttatcatgacttcaattgt |
19383077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 19337637 - 19337601
Alignment:
| Q |
183 |
ttgaacttgaataagataaaataattcaagtggaatt |
219 |
Q |
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| T |
19337637 |
ttgaacttgactaagataaaacaattcaagtggaatt |
19337601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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