View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_low_15 (Length: 290)
Name: NF4200_low_15
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 15474209 - 15473938
Alignment:
| Q |
1 |
gggtatggagcaaacttatggaagccattaagtgaagattgcattaattggttaaattcaaagccatcacaatcagtggtgtatatctcctttggaagca |
100 |
Q |
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| T |
15474209 |
gggtatggagcaaacttatggaagccattaagtgaagattgcattaattggttaaatgcaaagccatcacaatcagtagtgtatatctcctttggaagca |
15474110 |
T |
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| Q |
101 |
tggtttctttaacatcagaacaaatagaagaactggctttgggattaaaagaaagtgaagtgaatttcttatgggttttaagagagtcagagcaaggaaa |
200 |
Q |
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| T |
15474109 |
tggtttctttaacatcagaacaaatagaagagttggctttgggattaaaagaaagtgaagtgaatttcttatgggttttaagagagtcagagcaaggaaa |
15474010 |
T |
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| Q |
201 |
attaccaaaatggtacaaagattctatcaaagaaaagggtataattgtaacatggtgtaaccaacttgaatt |
272 |
Q |
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| T |
15474009 |
attaccaaaagggtacaaagattctatcaaagaaaagggcataattgtaacatggtgtaaccaacttgaatt |
15473938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 15466066 - 15465795
Alignment:
| Q |
1 |
gggtatggagcaaacttatggaagccattaagtgaagattgcattaattggttaaattcaaagccatcacaatcagtggtgtatatctcctttggaagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15466066 |
gggtatggagcaaacttatggaagccattaagtgaatattgcattaattggttaaattcaaagccatcacaatcagtggtgtatatctcctttggaagca |
15465967 |
T |
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| Q |
101 |
tggtttctttaacatcagaacaaatagaagaactggctttgggattaaaagaaagtgaagtgaatttcttatgggttttaagagagtcagagcaaggaaa |
200 |
Q |
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| T |
15465966 |
tggtttctttaacatcagaacaaatagaagagctggctttgggattaaaagaaagtgaagtaaatttcttatgggttttaagagagttagagcaaggcaa |
15465867 |
T |
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| Q |
201 |
attaccaaaatggtacaaagattctatcaaagaaaagggtataattgtaacatggtgtaaccaacttgaatt |
272 |
Q |
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| T |
15465866 |
gttaccaaaggggtacaaagattttatcaaagaaaagggtataattgtaacatggtgtaaccaacttgaatt |
15465795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 13694292 - 13694348
Alignment:
| Q |
121 |
caaatagaagaactggctttgggattaaaagaaagtgaagtgaatttcttatgggtt |
177 |
Q |
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| T |
13694292 |
caaatagaagaactagctttgggattaaacgatagtgaaaaatatttcttatgggtt |
13694348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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