View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4200_low_16 (Length: 251)

Name: NF4200_low_16
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4200_low_16
NF4200_low_16
[»] chr2 (22 HSPs)
chr2 (12-237)||(21794438-21794663)
chr2 (11-188)||(18163940-18164118)
chr2 (11-205)||(43081581-43081778)
chr2 (11-205)||(45485735-45485929)
chr2 (61-188)||(302387-302513)
chr2 (61-206)||(295733-295878)
chr2 (12-180)||(13273316-13273468)
chr2 (61-167)||(39190647-39190753)
chr2 (116-185)||(29960364-29960433)
chr2 (16-87)||(45497005-45497078)
chr2 (16-87)||(45504747-45504820)
chr2 (201-251)||(5989321-5989371)
chr2 (201-251)||(45485963-45486013)
chr2 (194-237)||(43081809-43081852)
chr2 (13-55)||(5983570-5983612)
chr2 (201-237)||(5983380-5983416)
chr2 (201-237)||(13273211-13273247)
chr2 (201-237)||(18163796-18163832)
chr2 (12-55)||(1645148-1645191)
chr2 (12-55)||(4285175-4285218)
chr2 (12-55)||(5989527-5989570)
chr2 (61-111)||(29960425-29960475)
[»] chr5 (10 HSPs)
chr5 (11-202)||(9507626-9507817)
chr5 (11-205)||(9503641-9503835)
chr5 (11-202)||(32090199-32090390)
chr5 (12-185)||(34854063-34854243)
chr5 (14-175)||(3627510-3627671)
chr5 (194-251)||(9507549-9507606)
chr5 (198-251)||(9503570-9503623)
chr5 (61-111)||(690121-690171)
chr5 (12-55)||(3031580-3031623)
chr5 (12-55)||(43095199-43095241)
[»] chr3 (16 HSPs)
chr3 (16-205)||(531482-531671)
chr3 (72-205)||(4315552-4315685)
chr3 (61-188)||(28920270-28920397)
chr3 (91-185)||(32813598-32813692)
chr3 (12-145)||(47743868-47744004)
chr3 (18-97)||(55418487-55418567)
chr3 (201-251)||(32813462-32813512)
chr3 (135-205)||(55418408-55418478)
chr3 (194-237)||(531688-531731)
chr3 (210-251)||(27237186-27237227)
chr3 (11-52)||(32813716-32813757)
chr3 (196-237)||(55418362-55418403)
chr3 (201-237)||(4315482-4315518)
chr3 (201-237)||(32813091-32813127)
chr3 (201-232)||(11171985-11172016)
chr3 (12-55)||(27237725-27237767)
[»] chr6 (5 HSPs)
chr6 (12-237)||(7501317-7501560)
chr6 (12-205)||(31888483-31888677)
chr6 (61-188)||(28249226-28249353)
chr6 (201-238)||(31888329-31888366)
chr6 (210-251)||(367474-367515)
[»] chr7 (7 HSPs)
chr7 (14-203)||(22582288-22582480)
chr7 (73-205)||(45937828-45937960)
chr7 (76-188)||(297081-297193)
chr7 (68-185)||(293191-293308)
chr7 (12-55)||(35323971-35324014)
chr7 (205-237)||(22582548-22582580)
chr7 (201-237)||(35324170-35324206)
[»] chr8 (6 HSPs)
chr8 (14-188)||(11096136-11096308)
chr8 (61-205)||(37186788-37186932)
chr8 (61-185)||(37786581-37786705)
chr8 (91-206)||(37791182-37791296)
chr8 (204-237)||(14685248-14685281)
chr8 (194-237)||(11096073-11096116)
[»] chr4 (10 HSPs)
chr4 (12-185)||(53011169-53011343)
chr4 (12-206)||(53008256-53008449)
chr4 (124-251)||(56563133-56563260)
chr4 (61-170)||(5715318-5715427)
chr4 (78-180)||(16853976-16854078)
chr4 (61-185)||(50935665-50935784)
chr4 (63-205)||(50911862-50912000)
chr4 (201-251)||(53011051-53011101)
chr4 (201-237)||(53008159-53008195)
chr4 (205-237)||(16854128-16854160)
[»] scaffold0038 (1 HSPs)
scaffold0038 (61-188)||(49388-49515)
[»] chr1 (1 HSPs)
chr1 (61-188)||(44541359-44541486)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 21794438 - 21794663
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaact 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||| ||||||||||||    
T  21794438 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatatatttataacacatgagtaagtatatatacaactggacgttgtaacaaact 21794537  T
Q  112 cctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagctaaaact 211  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||  || || |||||||||||||||    
T  21794538 cctctaacaaactaactaccttggttaacacgctaaccatggtttgttactagactctgcttctgaagacatcagaagctgcacatcagaagctaaaact 21794637  T
Q  212 aactaaactgaattactaaaccaata 237  Q
    |||||||||||| |||||||||||||    
T  21794638 aactaaactgaactactaaaccaata 21794663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 18164118 - 18163940
Alignment:
Q  11 cagagatatgagtaaaagacttgtgtaattttattgaatgaatt-gtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  18164118 cagagatatgagtaaaagacttgtgtaattttattgaatgaattcgtcatctatttacaacacttgagtgagtatatatacaactggacgttgtaacaaa 18164019  T
Q  110 ctcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  18164018 ctcctctaacaaactaactaccttggttaacacgctaaccaatggttattactagactctacttctaaagacatcagaa 18163940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 43081581 - 43081778
Alignment:
Q  11 cagagatatgagtaaaagacttgtgtaattttattgaatgaa---ttgtcatctatttacaacacatgagtgagtatatatataactggacattgtaaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||    
T  43081581 cagagatatgagtaaaagacttgtgtaattttattgaatgaaaaattgtcatctatttacaacacatgagtgagtacatatacaattggacgttgtaaca 43081680  T
Q  108 aactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 205  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||  || || |||||||||    
T  43081681 aactcctataacaaactaactaccttcgttaacatgctaaccaatgtttattactagactctgcttctgaagacatcagaagctgcacatcagaagct 43081778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 45485735 - 45485929
Alignment:
Q  11 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtc--atctatttacaacacatgagtgagtatatatataactggacattgtaacaa 108  Q
    |||||||||||||||  ||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  45485735 cagagatatgagtaa--gacttttgtaattttattgaatgaattgtctaatttatttacaacacatgagtgagtatatatacaactggacgttgtaacaa 45485832  T
Q  109 actcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||  || ||||||||||||    
T  45485833 actcctctaacaaactaactaccttggttaacacgctaaccaaggtttgttgctagactctgtttctgaagacatcagaagctgcacttcagaagct 45485929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 302513 - 302387
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||    
T  302513 tatttacaacacat-agtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactaccctggttaacacgctaaccaaggttggtta 302415  T
Q  161 ctagactctgcttctaaagacatcagaa 188  Q
    ||||||||||||||| ||||||||||||    
T  302414 ctagactctgcttctgaagacatcagaa 302387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 295878 - 295733
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |||||||  |||    
T  295878 tatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactatcctggttaacacactaatcaaggttggtta 295779  T
Q  161 ctagactctgcttctaaagacatcagaaattgtacttcagaagcta 206  Q
    ||||||||||||||| ||||||||||||  || || ||||||||||    
T  295778 ctagactctgcttctgaagacatcagaagctgcacatcagaagcta 295733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 13273468 - 13273316
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaact 111  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||                 
T  13273468 agagatatgagtaaaagacttgtgtaattttattgaataaattgtcatatatttacaacacatgagtgaatatatatacaactggac------------- 13273382  T
Q  112 cctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaaga 180  Q
        ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  13273381 ---gtaacaaactaactaccttggttaacacgctaaccaaggtttgttactagactctgcttctgaaga 13273316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 39190647 - 39190753
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||    
T  39190647 tatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccttggttaacatgctaaccaaagtttgtta 39190746  T
Q  161 ctagact 167  Q
    |||||||    
T  39190747 ctagact 39190753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 29960433 - 29960364
Alignment:
Q  116 taacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatca 185  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  29960433 taacaaactaactaccttggttaacacgctaaccaaggtttgttactagaccctgcttctgaagacatca 29960364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 45497005 - 45497078
Alignment:
Q  16 atatgagtaaaagacttgtgtaattttattgaatgaattgtc--atctatttacaacacatgagtgagtatata 87  Q
    ||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||    
T  45497005 atatgagtaaaagacttgtgtaattttattgaatgaattatctaatttatttacaacacatgagtgagtatata 45497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 45504747 - 45504820
Alignment:
Q  16 atatgagtaaaagacttgtgtaattttattgaatgaattgtc--atctatttacaacacatgagtgagtatata 87  Q
    ||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||    
T  45504747 atatgagtaaaagacttgtgtaattttattgaatgaattatctaatttatttacaacacatgagtgagtatata 45504820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 5989371 - 5989321
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5989371 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 5989321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 45485963 - 45486013
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45485963 aagctaaaactaactaaactgaattactaaacaaatacacctccttaattc 45486013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 43081809 - 43081852
Alignment:
Q  194 acttcagaagctaaaactaactaaactgaattactaaaccaata 237  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  43081809 acttcagaagctaaaactaactaaactgaattactaaactaata 43081852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 5983612 - 5983570
Alignment:
Q  13 gagatatgagtaaaagacttgtgtaattttattgaatgaattg 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  5983612 gagatatgaataaaagacttgtgtaattttattgaatgaattg 5983570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 5983416 - 5983380
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  5983416 aagctaaaactaactaaactgaattactaaaccaata 5983380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 13273247 - 13273211
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  13273247 aagctaaaactaactaaactgaattactaaaccaata 13273211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 18163832 - 18163796
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  18163832 aagctaaaactaactaaactgaattactaaaccaata 18163796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 1645191 - 1645148
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 55  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  1645191 agagatatgagtaaaagacttatataattttattgaatgaattg 1645148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 4285218 - 4285175
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 55  Q
    |||| ||||| |||||||||||||||||||||||||||||||||    
T  4285218 agaggtatgaataaaagacttgtgtaattttattgaatgaattg 4285175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 5989570 - 5989527
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 55  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  5989570 agagatatgtataaaagacttgtgtaattttattgaatgaattg 5989527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 29960475 - 29960425
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaact 111  Q
    |||||||||||||| |||||||||||||| |||| ||| ||||||||||||    
T  29960475 tatttacaacacataagtgagtatatatacaactagacgttgtaacaaact 29960425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 9507817 - 9507626
Alignment:
Q  11 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  9507817 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgggtatatatataactggacgttgtaacaaac 9507718  T
Q  111 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaa 202  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  9507717 tcctttaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagttgtacttcagaa 9507626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 9503835 - 9503641
Alignment:
Q  11 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9503835 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacgttgtaacaaac 9503736  T
Q  111 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 205  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9503735 tcctctaacaaactaactatcttgattaacacgctaaccaaagtttattactagactctgcttctgaagacttcagaaattgtacttcagaagct 9503641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 32090390 - 32090199
Alignment:
Q  11 cagagatatgagtaaaagacttgtgtaattttattgaatgaattg-tcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  32090390 cagagatatgagtaaaagacttgtgtaattttattgaatgaattcatcat-tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaa 32090292  T
Q  110 ctcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaa 202  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||| ||||| ||||||||||||  ||||||||||||    
T  32090291 ctcctctaacaaactaactacattggttaacacgctaaccgaggtttgttactagattctacttctgaagacatcagaagctgtacttcagaa 32090199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 34854243 - 34854063
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaa--ttgtcatctatttacaacacatgagtgagtatatata-----taactggacattgta 104  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||      |||||||| |||||    
T  34854243 agagatatgagtaaaagatttgtgtaattttattgaatgaaaattgtcatttatttacaacacatgagtgagtatatatacaactgaactggacgttgta 34854144  T
Q  105 acaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatca 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  34854143 acaaactcctctaacaaattaactaccttggttaacacgctaaccaaagtttattactagactctgcttctgaagacatca 34854063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 3627671 - 3627510
Alignment:
Q  14 agatatgagtaaaagacttgtgtaattttattgaat-gaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaactc 112  Q
    ||||||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||     
T  3627671 agatatgag-aaaagatttgtgtaattttattgaattgaattctcatttatttacaacacatgagtgagtatatatacatctggacgttgtaacaaactt 3627573  T
Q  113 ctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttct 175  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||    
T  3627572 ctctaataaactaactacattggttaacacgctaaccaagatttgctactagactctgcttct 3627510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 9507606 - 9507549
Alignment:
Q  194 acttcagaagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 251  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9507606 acttcagaagctaaaactaactaaattgaattactaaaccaatacacctccttaattc 9507549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 9503623 - 9503570
Alignment:
Q  198 cagaagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 251  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9503623 cagaagctaaaactaactaaattgaattactaaaccaatacacctccttaattc 9503570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 690171 - 690121
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaact 111  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  690171 tatttacaacacatgagtgagtatatatacaactgaacattgtaacaaact 690121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 3031623 - 3031580
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 55  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  3031623 agagaaatgagtagaagacttgtgtaattttattgaatgaattg 3031580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 43095241 - 43095199
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 55  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  43095241 agagatatgagtaaaagacttgtg-aaatttattgaatgaattg 43095199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 531482 - 531671
Alignment:
Q  16 atatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctc 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  531482 atatgagtaaaagacttgtgtaatttcattgaatgaattgtcatatatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctc 531581  T
Q  116 taacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 205  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |  |||||||||    
T  531582 taaaaaactaactacctttgttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagttgcatatcagaagct 531671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 4315685 - 4315552
Alignment:
Q  72 catgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgc 171  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  4315685 catgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaacgtttgttactagactctgc 4315586  T
Q  172 ttctaaagacatcagaaattgtacttcagaagct 205  Q
    |||| ||| ||||||||  || ||||||||||||    
T  4315585 ttctgaagccatcagaagctgcacttcagaagct 4315552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 28920270 - 28920397
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||||    
T  28920270 tatttacaacatatgagtgagtatatatacaactggacgttataacaaactcctctaataaactaactaccctggttaacatgctaaccaagattgatta 28920369  T
Q  161 ctagactctgcttctaaagacatcagaa 188  Q
    ||||||| ||||||| ||||||||||||    
T  28920370 ctagactatgcttctgaagacatcagaa 28920397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 32813692 - 32813598
Alignment:
Q  91 aactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatca 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  32813692 aactggacgttgtaacaaactcctctaacaaactaactaccttcgttaacacgctaaccaaggtttgttactagattctgcttctaaagacatca 32813598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 47744004 - 47743868
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaa--ttttattgaat-gaatt-gtcatctatttacaacacatgagtgagtatatatataactggacattgtaaca 107  Q
    ||||||| |||||||||| ||||||||  ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| || |||| ||| ||||||||    
T  47744004 agagatacgagtaaaagatttgtgtaaatttttattgaattgaattcgtcat-tatttacaacacatgagtgaatatatttacaactagacgttgtaaca 47743906  T
Q  108 aactcctctaacaaactaactaccttggttaacacgct 145  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  47743905 aactcctgtaacaaactaactaccttggttaacacgct 47743868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 55418567 - 55418487
Alignment:
Q  18 atgagtaaaagacttgtgtaattttattgaa-tgaattgtcatctatttacaacacatgagtgagtatatatataactgga 97  Q
    ||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| ||||||||||||||||||| |||||||    
T  55418567 atgagtaaaagacttgtgtaattttattgaaatgaatcgtcgtatatttacaatacatgagtgagtatatatacaactgga 55418487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 32813512 - 32813462
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32813512 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 32813462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 55418478 - 55418408
Alignment:
Q  135 gttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 205  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||| |||||||    
T  55418478 gttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagctgttctttagaagct 55418408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 531688 - 531731
Alignment:
Q  194 acttcagaagctaaaactaactaaactgaattactaaaccaata 237  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  531688 acttcagaagctaaaactaactatactgaattactaaaccaata 531731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 27237227 - 27237186
Alignment:
Q  210 ctaactaaactgaattactaaaccaatacacctccttaattc 251  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  27237227 ctaactaaactgaattactaaactaatacacctccttaattc 27237186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 32813757 - 32813716
Alignment:
Q  11 cagagatatgagtaaaagacttgtgtaattttattgaatgaa 52  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  32813757 cagagatatgagtaacagacttgtgtaattttattgaatgaa 32813716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 55418403 - 55418362
Alignment:
Q  196 ttcagaagctaaaactaactaaactgaattactaaaccaata 237  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  55418403 ttcagaagctaaaactaactaaactaaattactaaaccaata 55418362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 4315518 - 4315482
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  4315518 aagctaaaactaactaaactgaattactaaaccaata 4315482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 32813127 - 32813091
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||||||||||||||||||||||||| ||||    
T  32813127 aagctaaaactaactaaactgaattactaaactaata 32813091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 11172016 - 11171985
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaac 232  Q
    ||||||||||||||||||||||||||||||||    
T  11172016 aagctaaaactaactaaactgaattactaaac 11171985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 27237767 - 27237725
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 55  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  27237767 agagatatgagtaaaagacttgtg-aaatttattgaatgaattg 27237725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 7501317 - 7501560
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | ||||||||||||    
T  7501317 agagatatgagtaaaagacttgtgtaattttattgaatgaattgttatctatttacaacacatgagtgagtatataaacaactgggcgttgtaacaaact 7501416  T
Q  112 cctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgct------------------tctaaagacatcagaaattgt 193  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||                  ||| |||||||||||| ||||    
T  7501417 cctctaacaaactaactatcttggttaacacgctaaccaaggtttgttactagactctgcttgtgaagacatcagaagctctgaagacatcagaagttgt 7501516  T
Q  194 acttcagaagctaaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  7501517 acttcagaagctaaaactaactaaactgaattactaaagcaata 7501560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 31888677 - 31888483
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaatt-gtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaac 110  Q
    |||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| || || || |||||||||||    
T  31888677 agagatatgagtaaaagaattgtgtaattttattgaataaaatcgtcatctatttacaacacatgagtgagtatatatacaattgcacgttgtaacaaac 31888578  T
Q  111 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 205  Q
    | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||  || |||| |||||||    
T  31888577 ttctctaacaaactaactaccttagttaacacgctaaccaaggtttgttactagactatgcttctgaagacatcagaagctgcactttagaagct 31888483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 28249353 - 28249226
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  28249353 tatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaaggtttgtta 28249254  T
Q  161 ctagactctgcttctaaagacatcagaa 188  Q
    |||||| |||||||| ||||||||||||    
T  28249253 ctagaccctgcttctgaagacatcagaa 28249226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 31888366 - 31888329
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaatac 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31888366 aagctaaaactaactaaactgaattactaaaccaatac 31888329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 367474 - 367515
Alignment:
Q  210 ctaactaaactgaattactaaaccaatacacctccttaattc 251  Q
    ||||||||| ||||||||| || |||||||||||||||||||    
T  367474 ctaactaaaatgaattacttaatcaatacacctccttaattc 367515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 22582288 - 22582480
Alignment:
Q  14 agatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaactcc 113  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  22582288 agatatgagtaaaaggcttgtgtaattttattgaatgaattctcatttatttacaacacatgagtgagtatatatacaactggacgttgtaccaaactcc 22582387  T
Q  114 tctaacaaactaactaccttggttaacacgctaaccaaggtttattactagact---ctgcttctaaagacatcagaaattgtacttcagaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| | |||||||||||| ||||||||||||||    
T  22582388 tctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgctgcttttgaagacatcagaagttgtacttcagaag 22582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 45937960 - 45937828
Alignment:
Q  73 atgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgct 172  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45937960 atgagtgagtatatatacaactggacgttgtaacaaactcctctaactaactaactaccttggttaacacgctaaccaaggtttattactagaccctgct 45937861  T
Q  173 tctaaagacatcagaaattgtacttcagaagct 205  Q
    | | ||||||||| ||  || ||||||||||||    
T  45937860 tttgaagacatcaaaagctgcacttcagaagct 45937828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 297193 - 297081
Alignment:
Q  76 agtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttct 175  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||    
T  297193 agtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttgttactaaactcagtttct 297094  T
Q  176 aaagacatcagaa 188  Q
     ||||||||||||    
T  297093 gaagacatcagaa 297081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 293308 - 293191
Alignment:
Q  68 aacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagact 167  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||    
T  293308 aacatatgagtgagtatatatacaactagacgttgtaacaaacccctctaacaaactaactaccttggttaacacgctaaccaatgtttgttactaaact 293209  T
Q  168 ctgcttctaaagacatca 185  Q
    | | |||| |||||||||    
T  293208 cagtttctgaagacatca 293191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 35323971 - 35324014
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35323971 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 35324014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 22582548 - 22582580
Alignment:
Q  205 taaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||||||||||||||||||||||||||    
T  22582548 taaaactaactaaactgaattactaaaccaata 22582580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 35324170 - 35324206
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaata 237  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  35324170 aagctaaaattaactaaactgaaatactaaaccaata 35324206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 11096308 - 11096136
Alignment:
Q  14 agatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaactcc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||    
T  11096308 agatatgagtaaaagacttgtgtaattttattgaatgaattgtcatatatttacaacacatgagtgagtatatatacaactgaacgttgtaacaaactcc 11096209  T
Q  114 tctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaa 188  Q
    ||||||||||||||||||||| |||||||||||||||| |||| |||||||||||  ||||| ||||||||||||    
T  11096208 tctaacaaactaactaccttgattaacacgctaaccaaagtttgttactagactc--cttctgaagacatcagaa 11096136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 37186788 - 37186932
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||  || |||| ||||||||    
T  37186788 tatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccctggttaacactatagccaatgtttatta 37186887  T
Q  161 ctagactctgcttctaaagacatcagaaattgtacttcagaagct 205  Q
    ||||||||||||||||||||||||||||  || ||||||||||||    
T  37186888 ctagactctgcttctaaagacatcagaagctgcacttcagaagct 37186932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 37786581 - 37786705
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||  |||    
T  37786581 tatttacaacacatgagtgaatatatatacaactggacgttgtaacaaagtcctctaacaaactaactaccctggttaacacgctaaccaaggttggtta 37786680  T
Q  161 ctagactctgcttctaaagacatca 185  Q
    ||||||||||||| | |||||||||    
T  37786681 ctagactctgcttatgaagacatca 37786705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 37791182 - 37791296
Alignment:
Q  91 aactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaat 190  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||  |||||| ||||||||||| ||||||||||||      
T  37791182 aactgaacgttgtaacaaactcctctaacaaactaactaccttggttaacatgctaatcaaggttggttacta-actctgcttctgaagacatcagaagc 37791280  T
Q  191 tgtacttcagaagcta 206  Q
    || || ||||||||||    
T  37791281 tgcacatcagaagcta 37791296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 14685281 - 14685248
Alignment:
Q  204 ctaaaactaactaaactgaattactaaaccaata 237  Q
    ||||||||||||||||||||||||||||||||||    
T  14685281 ctaaaactaactaaactgaattactaaaccaata 14685248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 11096116 - 11096073
Alignment:
Q  194 acttcagaagctaaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||| |||||||||||||||||||||| |||| |||||    
T  11096116 acttcagaagttaaaactaactaaactgaattattaaatcaata 11096073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 53011343 - 53011169
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatga-gtgagtatatatataactggacattgtaacaaac 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||| |||||||| || |||||||     
T  53011343 agagatatgaataaaagacttgtgtaattttattgaatgaattggcatatatttacaacacaggaagtgagtatatatacaactggacgttttaacaaaa 53011244  T
Q  111 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatca 185  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  53011243 tcctctaacaaactaactaccttggttaacacgctaaccaatgtttgttactagactctgcttctgaagacatca 53011169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 53008449 - 53008256
Alignment:
Q  12 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatga-gtgagtatatatataactggacattgtaacaaac 110  Q
    |||||||||| ||||||||||||  ||||||||||||| ||||| ||| ||||||||||||| || ||||||||||||| |||||||| |||||||||||    
T  53008449 agagatatgaataaaagacttgt--aattttattgaattaattggcatatatttacaacacaggaagtgagtatatatacaactggacgttgtaacaaac 53008352  T
Q  111 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagcta 206  Q
    |||||||||||||||||||  |||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  53008351 tcctctaacaaactaactagtttggttaatacgctaaccaatgtttgttactagactctgcttctgaagacatcagaagctgtacttcagaagcta 53008256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 56563260 - 56563133
Alignment:
Q  124 taactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagctaaaactaactaaactgaa 223  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||  || |||||| |||||||||||||||||||||||    
T  56563260 taactaccttggttaacacgctaaccaaggtttgttagtagactctgcttctgaagacatcagaagctgcacttcataagctaaaactaactaaactgaa 56563161  T
Q  224 ttactaaaccaatacacctccttaattc 251  Q
    ||| ||||||||||||| ||||||||||    
T  56563160 ttattaaaccaatacacttccttaattc 56563133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 5715427 - 5715318
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||   |||||||||||||||||||||||| |||    
T  5715427 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaattattctggttaacacgctaaccaaggtttgtta 5715328  T
Q  161 ctagactctg 170  Q
    ||||||||||    
T  5715327 ctagactctg 5715318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 180
Target Start/End: Original strand, 16853976 - 16854078
Alignment:
Q  78 tgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaa 177  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |    
T  16853976 tgagtatatatacaactggacgttgtaacaaattcctctaacaaactaactacgttggttaacacgctaaccaaggtttgttactagactctgcttctga 16854075  T
Q  178 aga 180  Q
    |||    
T  16854076 aga 16854078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 50935784 - 50935665
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||||||||||||||||||||| |||| ||  |||||||||||||||||    ||||||||||||||||||||||||||||||| |||| |||    
T  50935784 tatttacaacacatgagtgagtatatatacaactagatgttgtaacaaactcctct----aactaactaccttggttaacacgctaaccaa-gtttgtta 50935690  T
Q  161 ctagactctgcttctaaagacatca 185  Q
    ||||||||  ||||| |||||||||    
T  50935689 ctagactcaacttctgaagacatca 50935665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 50912000 - 50911862
Alignment:
Q  63 tttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattact 162  Q
    ||||||||||||||||||||||||||| ||||||   |||||||||||||||||    ||||||||||||||||||| ||||||||||| |||| |||||    
T  50912000 tttacaacacatgagtgagtatatatacaactgggtgttgtaacaaactcctct----aactaactaccttggttaatacgctaaccaa-gtttgttact 50911906  T
Q  163 agactc-tgcttctaaagacatcagaaattgtacttcagaagct 205  Q
    ||||||  |||||| ||||||||||||  || || |||||||||    
T  50911905 agactcaagcttctgaagacatcagaatctgcacatcagaagct 50911862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 53011101 - 53011051
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53011101 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattc 53011051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 53008195 - 53008159
Alignment:
Q  201 aagctaaaactaactaaactgaattactaaaccaata 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  53008195 aagctaaaactaactaaactgaattactaaaccaata 53008159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 16854128 - 16854160
Alignment:
Q  205 taaaactaactaaactgaattactaaaccaata 237  Q
    ||||||||| |||||||||||||||||||||||    
T  16854128 taaaactaattaaactgaattactaaaccaata 16854160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 49515 - 49388
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  49515 tatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaaggtttgtta 49416  T
Q  161 ctagactctgcttctaaagacatcagaa 188  Q
    |||||| |||||||| ||||||||||||    
T  49415 ctagaccctgcttctgaagacatcagaa 49388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 44541359 - 44541486
Alignment:
Q  61 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 160  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||  |||    
T  44541359 tatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactaccctggttaacacactaatcaaggttggtta 44541458  T
Q  161 ctagactctgcttctaaagacatcagaa 188  Q
     |||||| ||||||| |||||| |||||    
T  44541459 ttagactatgcttctgaagacaacagaa 44541486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University