View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_low_3 (Length: 517)
Name: NF4200_low_3
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 22328965 - 22328597
Alignment:
| Q |
1 |
ctgatggatcatcggcgaaagatagtgatgatggtgatcaacgatattcgccgtcgccattgaaggatctatccaagcacgaactgaaggattgtaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328965 |
ctgatggatcatcggcgaaagatagtgatgatggtgatcaacgatattcgccgtcgccattgaaggatctatccaagcacgaactgaaggattgtaactg |
22328866 |
T |
|
| Q |
101 |
gactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaatccagcaccatggccactgttgccac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22328865 |
gactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaatccagcaccatggccactgttaccac |
22328766 |
T |
|
| Q |
201 |
catctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctcttgatgctgatgctgttgttgctg |
300 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22328765 |
catctgcagcattagcattaatattattagcattccaagccatcattctattcaatctgccgttatcatgttcctcttgatgctgctgctgttgttgctg |
22328666 |
T |
|
| Q |
301 |
ctcagaccacaaggtgcttccacttccaccaccgtcgtaaccaagggaggagtttccggcgaaaagcac |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328665 |
ctcagaccacaaggtgcttccacttccaccaccgtcgtaaccaagggaggagtttccggcgaaaagcac |
22328597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 413 - 502
Target Start/End: Complemental strand, 22328553 - 22328464
Alignment:
| Q |
413 |
ctctgaagcataataggatcttgaaaagattgcaatgagagacggagatcttgctgctgggtggttgccgccgttcgagagagtaaatcc |
502 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328553 |
ctctgaagcataataggatcttgaaaagattgcaatgagagacggagatcttgctgctgggtggttgccgccgttcgagagagtaaatcc |
22328464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 2534998 - 2535105
Alignment:
| Q |
178 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
277 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
2534998 |
agcaccatggccactgttaccaccatctacagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgatcctct |
2535097 |
T |
|
| Q |
278 |
tgatgctg |
285 |
Q |
| |
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|| ||||| |
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| T |
2535098 |
tgctgctg |
2535105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 11447860 - 11447753
Alignment:
| Q |
178 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
277 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
11447860 |
agcaccatggccactgttaccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgttcctct |
11447761 |
T |
|
| Q |
278 |
tgatgctg |
285 |
Q |
| |
|
|| ||||| |
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|
| T |
11447760 |
tgctgctg |
11447753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 32507075 - 32507022
Alignment:
| Q |
67 |
atctatccaagcacgaactgaaggattgtaactggactgaaggggtcccctctg |
120 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32507075 |
atctaaccaagcacgaactgaaggattgtaactggactgaaggggtcccctctg |
32507022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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