View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4200_low_4 (Length: 492)

Name: NF4200_low_4
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4200_low_4
NF4200_low_4
[»] chr8 (2 HSPs)
chr8 (11-438)||(31599837-31600249)
chr8 (328-390)||(30525219-30525281)
[»] chr4 (2 HSPs)
chr4 (328-377)||(1460468-1460518)
chr4 (336-409)||(9928771-9928844)
[»] chr3 (2 HSPs)
chr3 (328-414)||(30130797-30130883)
chr3 (328-388)||(50196900-50196960)
[»] chr7 (1 HSPs)
chr7 (328-377)||(23972473-23972522)
[»] chr5 (1 HSPs)
chr5 (328-377)||(8402009-8402058)
[»] chr1 (3 HSPs)
chr1 (344-409)||(25685712-25685777)
chr1 (312-388)||(35536769-35536846)
chr1 (344-392)||(10645788-10645836)
[»] scaffold1432 (1 HSPs)
scaffold1432 (347-391)||(968-1012)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 438
Target Start/End: Complemental strand, 31600249 - 31599837
Alignment:
Q  11 catcatcaatggccaggccacccttcacattaattacagttctaaccattatgcaactaatattctaaacaaagaaaagggttcattttaactttcttta 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31600249 catcatcaatggccaggccactcttcacattaattacagttctaaccattatgcaactaatattctaaacaaagaaaagggttcattttaactttcttta 31600150  T
Q  111 ccatactttaagaagagnnnnnnnnnnnnnnnctttatgtactccttctatgacaatatctaatttcattctatatttttctctcgaaaataaataacta 210  Q
    |||||||| || || |                ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||| ||    
T  31600149 ccatacttcaaaaaaa--------aaaaaaaactttatgtactccttctatgacaatatttaatttcatactatatttctctctcgacaataaataatta 31600058  T
Q  211 aaaataatattggttaaaccagttaaaaaggagtagagggagtaacaacgattttaacaaattagactcattaactaccggttgattgattgatgcttgg 310  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31600057 aaaataatattggtcaaaccaattaaaaaggagcagagggagtaacaacgattttaacaaattagactcattaactactggttgattgattgatgcttgg 31599958  T
Q  311 gatgttaaatggacttcatctcattccaaaaattagctcaaaggatgaaagtactcaaacatatttagacattcaacaacccataaatctcagcaatgta 410  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||           
T  31599957 gatgttaaatggacttcatctcaccccaaaaattagctcaaaggatgaaagtactcaaacatatttatacattcaacaacccataaatctcag------- 31599865  T
Q  411 ggactaatgacaaacaacttcaacaggg 438  Q
     |||||||||||||||||||||||||||    
T  31599864 agactaatgacaaacaacttcaacaggg 31599837  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 390
Target Start/End: Complemental strand, 30525281 - 30525219
Alignment:
Q  328 atctcattccaaaaattagctcaaaggatgaaagtactcaaacatatttagacattcaacaac 390  Q
    ||||||| ||||||  |||||||||| |||| |||||||||||||||||| ||| | ||||||    
T  30525281 atctcatcccaaaagctagctcaaagaatgagagtactcaaacatatttatacactaaacaac 30525219  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 1460518 - 1460468
Alignment:
Q  328 atctcattccaaaaattagctcaaagg-atgaaagtactcaaacatattta 377  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||||||    
T  1460518 atctcattccaaaaactagctcaaacgtatgaaagtactcaaacatattta 1460468  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 9928771 - 9928844
Alignment:
Q  336 ccaaaaattagctcaaaggatgaaagtactcaaacatatttagacattcaacaacccataaatctcagcaatgt 409  Q
    ||||||||||||| |||  || |  ||||||||||||||||| ||| ||||||||||  |||||| ||||||||    
T  9928771 ccaaaaattagcttaaaaaattagggtactcaaacatatttatacactcaacaacccggaaatctgagcaatgt 9928844  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 30130797 - 30130883
Alignment:
Q  328 atctcattccaaaaattagctcaaaggatgaaagtactcaaacatatttagacattcaacaacccataaatctcagcaatgtaggac 414  Q
    ||||||| ||||||| ||||||||| ||||||  ||||||| |||||||| ||| |||||| ||||  || || |||||||||||||    
T  30130797 atctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacagcccaagaacctgagcaatgtaggac 30130883  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 50196960 - 50196900
Alignment:
Q  328 atctcattccaaaaattagctcaaaggatgaaagtactcaaacatatttagacattcaaca 388  Q
    ||||||| |||||| ||||||||||||||||  ||| | ||||||||||| ||| ||||||    
T  50196960 atctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaaca 50196900  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 23972522 - 23972473
Alignment:
Q  328 atctcattccaaaaattagctcaaaggatgaaagtactcaaacatattta 377  Q
    |||||||||||||| ||| ||||||||||||  |||||||||||||||||    
T  23972522 atctcattccaaaagttaactcaaaggatgagggtactcaaacatattta 23972473  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 8402009 - 8402058
Alignment:
Q  328 atctcattccaaaaattagctcaaaggatgaaagtactcaaacatattta 377  Q
    |||||||||||||| ||||||||||||| ||  |||||||| ||||||||    
T  8402009 atctcattccaaaagttagctcaaaggaggagggtactcaagcatattta 8402058  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 409
Target Start/End: Complemental strand, 25685777 - 25685712
Alignment:
Q  344 tagctcaaaggatgaaagtactcaaacatatttagacattcaacaacccataaatctcagcaatgt 409  Q
    ||||||||| ||||| |||| ||||||||||||| ||| |||||||| || |||||| | ||||||    
T  25685777 tagctcaaatgatgagagtattcaaacatatttatacactcaacaactcagaaatctgaacaatgt 25685712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 35536769 - 35536846
Alignment:
Q  312 atgttaaatggacttc-atctcattccaaaaattagctcaaaggatgaaagtactcaaacatatttagacattcaaca 388  Q
    |||||||||||||||| ||||||| |||||| ||| |||||| |||||   ||||  |||||||||| ||||||||||    
T  35536769 atgttaaatggacttcaatctcatcccaaaagttaactcaaatgatgaggatacttgaacatatttatacattcaaca 35536846  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 10645836 - 10645788
Alignment:
Q  344 tagctcaaaggatgaaagtactcaaacatatttagacattcaacaaccc 392  Q
    |||||| ||||||||  ||||||||||||||||| ||| ||||||||||    
T  10645836 tagctctaaggatgagggtactcaaacatatttatacactcaacaaccc 10645788  T

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Target: scaffold1432 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 968 - 1012
Alignment:
Q  347 ctcaaaggatgaaagtactcaaacatatttagacattcaacaacc 391  Q
    ||||||||||||   |||||||||||||||| |||||||||||||    
T  968 ctcaaaggatgaggatactcaaacatatttatacattcaacaacc 1012  T

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