View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_low_6 (Length: 446)
Name: NF4200_low_6
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 18319116 - 18319524
Alignment:
| Q |
16 |
acctttagaagagctttgaaccgtattgtgtaaagtaacaacagcccaattaccataacaccgagatattttgactaaccattcacacttgaacttcaac |
115 |
Q |
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| T |
18319116 |
acctttagaagagctttgaaccgtattgtgtaaagtaacaacagcccaattaccataacaccgagatattttgactaaccattcacacttgaacttcaac |
18319215 |
T |
|
| Q |
116 |
gtgcactcatgtcagatcagatatgctctaagaattacattgcttcctccaaagtgagacttgaggcattgaggccgatactaaaccacatttgcaattg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
18319216 |
gtgcactcatgtcagatcagatatgctctaagaattacattgcttcctccaaagtgagacttgaggcattgaggccaatactaaaccgtatttgcaattg |
18319315 |
T |
|
| Q |
216 |
gaaagaaagaaaatggtagaggaagaagagaaacttttgcattatagaaactgagaccatattatgattaattaaaactagaaattttactaaagaacaa |
315 |
Q |
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| T |
18319316 |
gaaagaaataaaatggtagaggaagaagttaaacttttgcattatagaaactgagaccatattatgattaattaaaactagaaattttacta------aa |
18319409 |
T |
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| Q |
316 |
gaagatatagccaatagctatattcgtacatagtttaatatcagtttaaacaattaactgatgtacaaaacaattaaaatgttaaactagtaatataata |
415 |
Q |
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| T |
18319410 |
gaagatatagccaatagctatatctatacatagtttaatatcag-ttaaacaattaactgatgtacaaaacaattaaaatgttaaactagtaatataata |
18319508 |
T |
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| Q |
416 |
taaaaactaataacta |
431 |
Q |
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| T |
18319509 |
taaaaactaataacta |
18319524 |
T |
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