View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4200_low_7 (Length: 378)
Name: NF4200_low_7
Description: NF4200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4200_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 103 - 368
Target Start/End: Original strand, 13382801 - 13383071
Alignment:
| Q |
103 |
atgtgaaagcacttacattcagaatcgagttcaacggctttgaaagtgacacccaaatcagtgaagagtttcttcacttgaacgcaaaagggacaatagc |
202 |
Q |
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| T |
13382801 |
atgtgaaagcatttacattcagaatcgagttcaacggctttgaaagtgacacccaaatcagtgaagagtttcttcacttgaacgcaaaagggacaatagc |
13382900 |
T |
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| Q |
203 |
ttttactgcnnnnnnn---ttcaatcaatcaatcaatcaccgaattaaacaaatcagcgttgttattattacaaacaatgaatcaacag--aaaaaagat |
297 |
Q |
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| T |
13382901 |
ttttgctgaagaaaaaaaattcaatcaatcaatcaatcaccgaattaaacaaatcagcgttgttattattacaaacaataaatcaacagaaaaaaaaaat |
13383000 |
T |
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| Q |
298 |
gaagtaatgagagaaaacgatttacctgaaaacaacgacgggattggaagacacgatctcctttgcctttg |
368 |
Q |
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| T |
13383001 |
gaaggaatgagagaaaaggatttacctgaaaacgacgacgggattggaagacacgatctcctttgcctttg |
13383071 |
T |
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