View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4201-Insertion-10 (Length: 655)

Name: NF4201-Insertion-10
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4201-Insertion-10
NF4201-Insertion-10
[»] chr2 (2 HSPs)
chr2 (7-655)||(36015314-36015967)
chr2 (56-164)||(10139548-10139657)


Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 7 - 655
Target Start/End: Original strand, 36015314 - 36015967
Alignment:
Q  7 aggtcaaaagcctagaaaatgaacttactcaaagcgacaaggattaagctaacaaggacaagggaatcaaggatcccctcgagctagcaagccataaaat 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36015314 aggtcaaaaccctagaaaatgaacttactcaaagcgacaaggattaagctaacaaggacaagggaatcaaggatcccctcgagctagcaagccataaaat 36015413  T
Q  107 atggaacggtgtactgtagagtcctcctctgatcaagaaaaacttgataaaaatcatgaggaagtaataaaatattcacttctttaaggagatcatgtca 206  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36015414 atggaacgttgtactgcagagtcctcctctgatcaagaaaaacttgataaaaatcatgaggaagtaataaaatattcacttctttaaggagatcatgtca 36015513  T
Q  207 aacaaattactttagtttaggaagcttttggtagatctatattggtttttgactccaacttataaaacttcaatgcaaatattattcatgacatgtatat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36015514 aacaaattactttagtttaggaagcttttggtagatctatattggtttttgactccaacttataaaacttcaatgcaaatattattcatgacatgtatat 36015613  T
Q  307 tgtagggtcaatctatactgattagggtgttgcagacctctcttaatgaatcttgtgcattttcatt------aaaaaagaaaatctctttaaattatta 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||| ||||||||||||||||||||    
T  36015614 tgtagggtcaatctatactgattagggtgttgcagacctctcttaatgaatcttgtgcattttcattaaaaaaaaaaaaaaaaatctctttaaattatta 36015713  T
Q  401 atttggtagtttagccttaaaaatgcannnnnnnnaataatttatctagtatttagatattaagaatgtcctaatcacatttgttaatgatgggagtaac 500  Q
    |||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36015714 atttggtagtctagccttaaaaatgca-tttttttaataatttatctagtatttagatattaagaatgtcctaatcacatttgttaatgatgggagtaac 36015812  T
Q  501 cttctatccatgacgtgataaattaaacctgaaagtgtgcttatgaattaaacgagacctaacaagttgctcaaaaaactagctttttccctaatttctc 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36015813 cttctatccatgacgtgataaattaaacctgaaagtgtgcttatgaattaaacgagacctaacaagttgctcaaaaaattagctttttccctaatttctc 36015912  T
Q  601 attgagtaactagagagaattgtgaagatattaaaaagccacaacatatatatac 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36015913 attgagtaactagagagaattgtgaagatattaaaaagccacaacatatatatac 36015967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 10139657 - 10139548
Alignment:
Q  56 taacaaggacaagggaatcaaggatcccctcgagc-tagcaagccataaaatatggaacggtgtactgtagagtcctcctctgatcaagaaaaacttgat 154  Q
    ||||||||| |||||||||||||| |||  | ||| |||| | | ||||||||| || || |||| |||| | ||| ||||||||||||||||| |||||    
T  10139657 taacaaggataagggaatcaaggaacccgcccagcctagccaacaataaaatatagatcgttgtaatgtaaaatccccctctgatcaagaaaaaattgat 10139558  T
Q  155 aaaaatcatg 164  Q
    || |||||||    
T  10139557 aagaatcatg 10139548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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