View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201-Insertion-11 (Length: 629)
Name: NF4201-Insertion-11
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-11 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 48 - 629
Target Start/End: Original strand, 29235229 - 29235806
Alignment:
| Q |
48 |
tgtatagtcatgtcatagatctttatgaagaactatgagatattattgaagatggttgtagcattccaatcaatgaagatggctcagctctaaaatgaaa |
147 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235229 |
tgtatagtcatgtcatagatctttatgaagaactatggtatattattgaagatggttgcagcattccaatcaatgaagatggctcagctctaaaatgaaa |
29235328 |
T |
|
| Q |
148 |
aagtatgatagaggagcagagaaagccttacaagaaacatcataaaactcaaagtatcatggtgaatactcttctcttccttgaggatattgaaacaatt |
247 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235329 |
aagtatgatagaggagcataaaaagccttacaagaaacatcataaaactcaaagtatcatggtgaatactcttctcttccttgaggatattgaaacaatt |
29235428 |
T |
|
| Q |
248 |
tacaaatttaatttgctctacatatgagggaaatcaacaagtaaaggaagccaagacaaatcttctgatccaacaacatgggctattcaaaatgaaggat |
347 |
Q |
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||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235429 |
tacaaatctactatgctctacatatgagggaaatcaacaagtaaaggaagccaagacaaatcttctgatccaacaacatgggctattcaaaatgaaggat |
29235528 |
T |
|
| Q |
348 |
gatgagaatattgaaaccatgttttcatggtttcaaacacttgtctatgatctgcaagtgcaaagcaaaagctacattgcagcaaatcatgtaaatataa |
447 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235529 |
gatgacaatattgaaaccatgtt----tggtttcaaacacttgtctatggtctgcaagtgcaaagcaaaagctacattgcagcaaatcatgtaaatataa |
29235624 |
T |
|
| Q |
448 |
ttttgaggaatctttttgtcagatggatacccaatgtgactcctatccaggaagctaaaggcttgaacaatctgggtctggaaactttgataagctttat |
547 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235625 |
ttttgaggaatctttttgtcagatggaaacccaatgtgactactatccaggaagctaaaggcttgaacaatctgggtctggaaactttgataagctttat |
29235724 |
T |
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| Q |
548 |
gaaaagtcaagagaatggtttctccagaaaaagcaagtttattgctcttaaatcaaaataaaaaacagtaaaagcacttcaa |
629 |
Q |
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| T |
29235725 |
aaaaagtcaagagaatggtttctctagaaaaagcaagtttattgctcttaaatcaaaataaaaaacagtaaaagcacttcaa |
29235806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 48 - 544
Target Start/End: Original strand, 29348528 - 29349020
Alignment:
| Q |
48 |
tgtatagtcatgtcatagatctttatgaagaactatgagatattattgaagatggttgtagcattccaatcaatgaagatggctcagctctaaaatgaaa |
147 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29348528 |
tgtatagtcatgtcatagatctttatgaagaactatggtatattattgaagatggttgcagcattccaatcaatgaagatggctcagctctaaaatgaaa |
29348627 |
T |
|
| Q |
148 |
aagtatgatagaggagcagagaaagccttacaagaaacatcataaaactcaaagtatcatggtgaatactcttctcttccttgaggatattgaaacaatt |
247 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29348628 |
aagtatgatagaggagcataaaaagccttacaagaaacatcataaaactcaaagtatcatggtgaatactcttctcttccttgaggatattgaaacaatt |
29348727 |
T |
|
| Q |
248 |
tacaaatttaatttgctctacatatgagggaaatcaacaagtaaaggaagccaagacaaatcttctgatccaacaacatgggctattcaaaatgaaggat |
347 |
Q |
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||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29348728 |
tacaaatctactatgctctacatatgagggaaatcaacaagtaaaggaagccaagacaaatcttctgatccaacaacatgggctattcaaaatgaaggat |
29348827 |
T |
|
| Q |
348 |
gatgagaatattgaaaccatgttttcatggtttcaaacacttgtctatgatctgcaagtgcaaagcaaaagctacattgcagcaaatcatgtaaatataa |
447 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29348828 |
gatgacaatattgaaaccatgtt----tggtttcaaacacttgtctatggtctgcaagtgcaaagcaaaagctacattgcagcaaatcatgtaaatataa |
29348923 |
T |
|
| Q |
448 |
ttttgaggaatctttttgtcagatggatacccaatgtgactcctatccaggaagctaaaggcttgaacaatctgggtctggaaactttgataagctt |
544 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29348924 |
ttttgaggaatctttttgtcagatggaaacccaatgtgactactatccaggaagctaaaggcttgaacaatctgggtctggaaactttgataagctt |
29349020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 272 - 561
Target Start/End: Original strand, 16801067 - 16801356
Alignment:
| Q |
272 |
tgagggaaatcaacaagtaaaggaagccaagacaaatcttctgatccaacaacatgggctattcaaaatgaaggatgatgagaatattgaaaccatgttt |
371 |
Q |
| |
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||||||||||||| |||| | ||||| ||| ||| |||||| |||||||| ||| |||||| ||| |||||||||||| ||||||||| ||||||| |
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| T |
16801067 |
tgagggaaatcaataagtgatggaaggaaaggcaactcttctagtccaacaatatgaactattctaaacgaaggatgatgaagatattgaaatcatgttt |
16801166 |
T |
|
| Q |
372 |
tcatggtttcaaacacttgtctatgatctgcaagtgcaaagcaaaagctacattgcagcaaatcatgtaaatataattttgaggaatctttttgtcagat |
471 |
Q |
| |
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||| |||||||||||||||||| | ||||||||||| || ||||||||||| || | ||||||||||||| | ||||||||| |||| | |||||| |
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| T |
16801167 |
tcaaggtttcaaacacttgtctcttgtctgcaagtgctaatcaaaagctacactgaatcaaatcatgtaaagaagattttgaggtgtcttcctatcagat |
16801266 |
T |
|
| Q |
472 |
ggatacccaatgtgactcctatccaggaagctaaaggcttgaacaatctgggtctggaaactttgataagctttatgaaaagtcaagaga |
561 |
Q |
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| | ||| || | ||| |||| |||||||||||||||||||| |||||||| ||||||| |||||| || | |||||||||| |||| |
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| T |
16801267 |
gaagaccgaagataactgctattcaggaagctaaaggcttgaataatctgggaatggaaaccctgataaactatttgaaaagtcatgaga |
16801356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 272 - 561
Target Start/End: Original strand, 16840353 - 16840642
Alignment:
| Q |
272 |
tgagggaaatcaacaagtaaaggaagccaagacaaatcttctgatccaacaacatgggctattcaaaatgaaggatgatgagaatattgaaaccatgttt |
371 |
Q |
| |
|
||||||||||||| |||| | ||||| ||| ||| |||||| |||||||| ||| |||||| ||| |||||||||||| ||||||||| ||||||| |
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| T |
16840353 |
tgagggaaatcaataagtgatggaaggaaaggcaactcttctagtccaacaatatgaactattctaaacgaaggatgatgaagatattgaaatcatgttt |
16840452 |
T |
|
| Q |
372 |
tcatggtttcaaacacttgtctatgatctgcaagtgcaaagcaaaagctacattgcagcaaatcatgtaaatataattttgaggaatctttttgtcagat |
471 |
Q |
| |
|
||| |||||||||||||||||| | ||||||||||| || ||||||||||| || | ||||||||||||| | ||||||||| |||| | |||||| |
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| T |
16840453 |
tcaaggtttcaaacacttgtctcttgtctgcaagtgctaatcaaaagctacactgaatcaaatcatgtaaagaagattttgaggtgtcttcctatcagat |
16840552 |
T |
|
| Q |
472 |
ggatacccaatgtgactcctatccaggaagctaaaggcttgaacaatctgggtctggaaactttgataagctttatgaaaagtcaagaga |
561 |
Q |
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| | ||| || | ||| |||| |||||||||||||||||||| |||||||| ||||||| |||||| || | |||||||||| |||| |
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| T |
16840553 |
gaagaccgaagataactgctattcaggaagctaaaggcttgaataatctgggaatggaaaccctgataaactatttgaaaagtcatgaga |
16840642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 16800867 - 16801051
Alignment:
| Q |
48 |
tgtatagtcatgtcatagatctttatgaagaactatgagatattattgaagatggttgtagcattccaatcaatgaagatggctcagctctaaa-atgaa |
146 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||| || |||||||||| |||||||| | | |||| |||||| |||||||||| | || |
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| T |
16800867 |
tgtatagtcatgatatagttcttgatgaagaactatgagatataatcgaagatggttttagcattctagtaaatgcagatggagcagctctaaataaaaa |
16800966 |
T |
|
| Q |
147 |
aaagtatgatagaggagcagagaaagccttacaagaaacatcataaaactcaaagtatcatggtgaatactcttctcttccttga |
231 |
Q |
| |
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||||| ||| | ||||| ||| ||| | ||| ||||||||||||||| || |||||||||||||||||||||| |||| |||| |
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| T |
16800967 |
aaagtttgacaaaggagtagaaaaaactttataagaaacatcataaagcttgcagtatcatggtgaatactcttcccttcgttga |
16801051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 18085487 - 18085666
Alignment:
| Q |
48 |
tgtatagtcatgtcatagatctttatgaagaactatgagatattattgaagatggttgtagcattccaatcaatgaagatggctcagctctaaaatgaaa |
147 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| | ||| |||||| ||||||||||||||||| |||||| |||||| | || ||||| |||| |
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| T |
18085487 |
tgtatagtcatgtcataactcttgatgaagaactatggggtataattgaatatggttgtagcattccagtcaatgcagatggagccactttaaaaagaaa |
18085586 |
T |
|
| Q |
148 |
aagtatgatagaggagcagagaaagccttacaagaaacatcataaaactcaaagtatcatggtgaatactcttctcttcc |
227 |
Q |
| |
|
|||| ||| | ||||||||| ||||| ||| ||||||||||||||| | |||||||||||||||| ||||| ||||| |
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|
| T |
18085587 |
aagtttgacaaaggagcagaaaaagctttagaagaaacatcataaagtttgtagtatcatggtgaataatcttcccttcc |
18085666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 261 - 393
Target Start/End: Original strand, 18085723 - 18085855
Alignment:
| Q |
261 |
tgctctacatatgagggaaatcaacaagtaaaggaagccaagacaaatcttctgatccaacaacatgggctattcaaaatgaaggatgatgagaatattg |
360 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||| |||| ||||||||| |||||||| | ||||||||||||||||||||||| |||||| |
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| T |
18085723 |
tgctccacatatgagggaaatcaacaagtgaatgaagtcaaggaaaatcttctagtccaacaatacaaactattcaaaatgaaggatgatgaagatattg |
18085822 |
T |
|
| Q |
361 |
aaaccatgttttcatggtttcaaacacttgtct |
393 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||| |
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| T |
18085823 |
aaactatggtttcaaggtttcaaacacttgtct |
18085855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 369
Target Start/End: Original strand, 11012542 - 11012641
Alignment:
| Q |
270 |
tatgagggaaatcaacaagtaaaggaagccaagacaaatcttctgatccaacaacatgggctattcaaaatgaaggatgatgagaatattgaaaccatgt |
369 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||||||| | |||||||| ||| | | |||| |||||||||||||| |||||||| |||||| |
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| T |
11012542 |
tatgagggaaatcaacaagtgaaggaagataagacaaatcttatagtccaacaatatgagttgttcataatgaaggatgatggcgatattgaagccatgt |
11012641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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