View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201-Insertion-12 (Length: 627)
Name: NF4201-Insertion-12
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-12 |
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Alignment Details
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 544
Target Start/End: Original strand, 10508214 - 10508733
Alignment:
| Q |
25 |
ggggtggtagaaaaattaattgggtaaaatggagtttggtttgtaagccaaaaatggaaagaggattgggggtgctggatgtgagggcggttaatctaag |
124 |
Q |
| |
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||||||| || ||||| |||||||| || |||||| ||||||| |||||||| | ||| |||| || |||||| ||||||||||||||| ||| | || |
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| T |
10508214 |
ggggtggaaggaaaatcaattgggtcaagtggagtgtggtttgcaagccaaagaaggagggagggttaggggtgagggatgtgagggcggtgaatttgag |
10508313 |
T |
|
| Q |
125 |
tttattggttaattggaaatggcggttattggcggatagggaggtactttggaaggaggtgttgaaggaaaaatatggtagttcaattggtgagatggtg |
224 |
Q |
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|||||||| || ||||||||| | |||||| |||||||| | ||||||||||||||| ||| ||||||||||||| || |||| |||| | || |
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| T |
10508314 |
tttattgggaaagtggaaatggtgtttattgacggataggagagcactttggaaggaggttttggaggaaaaatatggaagggtggttggagagaggttg |
10508413 |
T |
|
| Q |
225 |
gtaggagaggagcatgctttgccatctttcgcatcaaaatggtggagggatttggttaggttggatggctcaaattggttcaataccgaaatcactagaa |
324 |
Q |
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| T |
10508414 |
gtgggaaatgattatgtaatgccgtcgtatgcttcaaagtggtggagggatttggtgagtatggatgaattgaattggtttaattccaaagtcactagaa |
10508513 |
T |
|
| Q |
325 |
gggtgaggaatggaatgaacatgagtttttgagaagtggcgcggaggtgggagtttactttccggcataaaaatcctagattattttcattgtcgaatca |
424 |
Q |
| |
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| T |
10508514 |
gggtggggagtggtgagaatacgaggttttgggagttggcgtggagggtggatcaacctttccggcttaaataccttcggctgttttctttgtcgaatca |
10508613 |
T |
|
| Q |
425 |
aaaggaggttaaggtgggggagttatgggtgggtgaagatacggagacaacctaggcatttacttggcggcgtccgctatttgtatgggaaaatgacatg |
524 |
Q |
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| T |
10508614 |
aaaggaggctatggtgggggagttacgggtgggagaacctacggagagagattgggagtttacttggcggcgtccgctctttgtatgagagcatgaactg |
10508713 |
T |
|
| Q |
525 |
ttgctagagatgatggagga |
544 |
Q |
| |
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||| | |||||| ||||||| |
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| T |
10508714 |
ttggttgagatgttggagga |
10508733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 27753048 - 27753139
Alignment:
| Q |
264 |
tggtggagggatttggttaggttggatggctcaaattggttcaataccgaaatcactagaagggtgaggaatggaatgaacatgagtttttg |
355 |
Q |
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|||||| ||||||| || |||||||||| ||||||||||| ||| ||||| | |||||| ||| |||||||| |||||| ||||||||| |
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| T |
27753048 |
tggtggggggatttagtgaggttggatgtgtcaaattggtttaattccgaacttactagagaggttaggaatggtgtgaacacgagtttttg |
27753139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 14249509 - 14249453
Alignment:
| Q |
12 |
tggggaggagtggggggtggtagaaaaattaattgggtaaaatggagtttggtttgt |
68 |
Q |
| |
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||||||||||| || || ||||| ||||||| |||||||||||||||| ||||||| |
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| T |
14249509 |
tggggaggagttggaggaggtaggaaaattagttgggtaaaatggagtaaggtttgt |
14249453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 442
Target Start/End: Original strand, 10238477 - 10238897
Alignment:
| Q |
21 |
gtggggggtggtagaaaaattaattgggtaaaatggagtttggtttgtaagccaaaaat-ggaaagaggattgggggtgctggatgtgagggcggttaat |
119 |
Q |
| |
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||||||||| |||| ||||| ||||||| | |||||||||||||||||||||||||| ||| | || || ||||||| ||||||||| ||||| || |
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| T |
10238477 |
gtggggggttgtaggaaaataaattggg--agatggagtttggtttgtaagccaaaaaaaggatggtggtttaggggtgcgggatgtgagagcggtaaac |
10238574 |
T |
|
| Q |
120 |
ctaagtttattggttaattggaaatggcggttattggcggatagggaggtactttggaaggaggtgttgaaggaaaaatatggtagttcaattggtgaga |
219 |
Q |
| |
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| T |
10238575 |
ttgagtttgttggctaagtggaaatggcagttattaaatgacgtggaggccctttggaaggaggtgttgttggaaaaatacgggagggtgacaggtgatt |
10238674 |
T |
|
| Q |
220 |
tggtggtaggagaggagcatgctttgccatctttcgcatcaaaatggtggagggatttggttaggttggatggctcaaattggttcaataccgaaatcac |
319 |
Q |
| |
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|| |||| ||||||| ||| || |||| || | || || |||||||||||||| |||||| ||||||| || |||||||||||| ||||||| || |
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| T |
10238675 |
tgttggttagagaggattatgtttggccaagttatgtctctaagtggtggagggatttagttaggatggatggatcgaattggttcaattccgaaataac |
10238774 |
T |
|
| Q |
320 |
tagaagggtgaggaatggaatgaacatgagtttttgagaagtggcgcggaggtgggagtttactttccggcataaaaatcctagattattttcattgtcg |
419 |
Q |
| |
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| T |
10238775 |
tagaagggtggggagtgggaggaatacgagtttttgggaggtcgcgtggagggggaatctcgctttccggtataaatatccaagattattctccttatca |
10238874 |
T |
|
| Q |
420 |
aatcaaaaggaggttaaggtggg |
442 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
10238875 |
aatcaaaaggaggctaaggtggg |
10238897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 12171424 - 12171480
Alignment:
| Q |
8 |
cctttggggaggagtggggggtggtagaaaaattaattgggtaaaatggagtttggt |
64 |
Q |
| |
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|||||||||||| | || |||||||| ||||||||||||||||||||||||||||| |
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| T |
12171424 |
cctttggggaggggaggaaggtggtaggaaaattaattgggtaaaatggagtttggt |
12171480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 20702753 - 20702678
Alignment:
| Q |
264 |
tggtggagggatttggttaggttggatggctcaaattggttcaataccgaaatcactagaagggtgaggaatggaa |
339 |
Q |
| |
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|||||||||||| | ||||||||||||| ||||||||||| ||| ||||||| ||||||| ||||||||||||| |
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| T |
20702753 |
tggtggagggatattgttaggttggatgaatcaaattggtttaatgccgaaatatctagaagagtgaggaatggaa |
20702678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 380
Target Start/End: Complemental strand, 21942966 - 21942860
Alignment:
| Q |
274 |
atttggttaggttggatggctcaaattggttcaataccgaaatcactagaagggtgaggaatggaatgaacatgagtttttgagaagtggcgcggaggtg |
373 |
Q |
| |
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||||||| |||||||||| ||||||||||||||| ||||||| |||||| ||| | ||||| || |||||||||||| |||||||| ||||| | |
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| T |
21942966 |
atttggtgaggttggatgtttcaaattggttcaattccgaaatttctagaaaagtgggaaatggtgagagcatgagtttttgggaagtggcttggagggg |
21942867 |
T |
|
| Q |
374 |
ggagttt |
380 |
Q |
| |
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||||||| |
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|
| T |
21942866 |
ggagttt |
21942860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 20702846 - 20702782
Alignment:
| Q |
171 |
ctttggaaggaggtgttgaaggaaaaatatggtagttcaattggtgagatggtggtaggagagga |
235 |
Q |
| |
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||||||||||||||||||| | ||||||||||||| |||||| || | ||||||| || ||||| |
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| T |
20702846 |
ctttggaaggaggtgttgatagcaaaatatggtagtgcaattgttggggtggtggtgggggagga |
20702782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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