View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201-Insertion-13 (Length: 617)
Name: NF4201-Insertion-13
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 7 - 617
Target Start/End: Original strand, 49584001 - 49584607
Alignment:
| Q |
7 |
agttcaaaatgaattacttgaggtaatgacataaacaatttcaaagtttttcattttaatatcgattgttactccgtccactgtcatggattggatctat |
106 |
Q |
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| T |
49584001 |
agttcaaaatgaattacttgaggtaatgacataaacaatttcaaagtttttcattttaatatcgattgttactccgtccattgtcatggattggatctat |
49584100 |
T |
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| Q |
107 |
acttattgatttgtcttccatacttattatttgctatgttcaattgattggtaggtgtcagagacacttgcagaaaggaacattagtccagaagattatt |
206 |
Q |
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| T |
49584101 |
acttattgatttgtcttccatacttatt----gctatgttcaattgattggtaggtgtcagagacacttgcagagaggaacattagtccagaagattatt |
49584196 |
T |
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| Q |
207 |
tttcgactctgaaaaatttaattgggctcaaagcccttgttgatggattagcaatcggtaaaggnnnnnnngatcttatatgcccccatgttgatgatgt |
306 |
Q |
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| T |
49584197 |
tttcgactctgaaaaatttaattgggctcaaagcccttgttgatggattagcaatcggtaaaggaaaaaaagatcttatatgcccccatgttgatgatgt |
49584296 |
T |
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| Q |
307 |
aaaatccaatgaagttgttctggtcggtccttcaaaaataccgaagggaaaagcttgtgcaatgcttgaaccctcagaaataataagctttctgacagga |
406 |
Q |
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| T |
49584297 |
aaaatccaatgaagctgttctggtcggtccttcaaaaataccgaagggaaaagcttgtgcaatgcttgaaccctcagaaataataagctttctgacagga |
49584396 |
T |
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| Q |
407 |
aatttcagattaagtaaatctcgaactgatgatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacctagatgtt |
506 |
Q |
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| T |
49584397 |
aacttcagattaagtaaatctcgaactgatgatctcttttgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacctagatgtt |
49584496 |
T |
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| Q |
507 |
ataattatgttccttgtaagaattctatggtcttccttgtccctcgagttaaacagttttcgaggaatctgctgaagggggtacaatatttcgattctcc |
606 |
Q |
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| T |
49584497 |
ataattatgttccttgtaagaattctatggtcttccttgtcccccgagttaaacagttttcaaggaatctgctgaagggggtacaatatttcgattctcc |
49584596 |
T |
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| Q |
607 |
gtttgaaatcc |
617 |
Q |
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| T |
49584597 |
gtttgaaatcc |
49584607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 15769610 - 15769547
Alignment:
| Q |
435 |
atgatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
498 |
Q |
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| T |
15769610 |
atgatctcttctgggaagctgtttggcctcgcttactggcaagaggttggcactctgagcaacc |
15769547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 46643193 - 46643132
Alignment:
| Q |
437 |
gatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
498 |
Q |
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| T |
46643193 |
gatctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaacc |
46643132 |
T |
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