View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4201-Insertion-15 (Length: 370)

Name: NF4201-Insertion-15
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4201-Insertion-15
NF4201-Insertion-15
[»] chr7 (3 HSPs)
chr7 (7-370)||(4328920-4329283)
chr7 (161-369)||(4498627-4498835)
chr7 (12-123)||(4498839-4498946)


Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 370
Target Start/End: Original strand, 4328920 - 4329283
Alignment:
Q  7 acttccaacatcctggtagtattaacaatatgagacttcaatgcaacttcaatatcgaccagactcctagtggcgtgcggtatggtacaatttccacatt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4328920 acttccaacatcctggtagtattaacaatatgagacttcaatgcaacttcaatatcgaccagactcctagtggcgtgcggtatggtccaatttccacatt 4329019  T
Q  107 ttcatccctcttgacaggcaaagtcaaaatactgcaattgtccttcttacctttaagacaaaggtctcataaacaagatctttcaagcggtcaagaaaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329020 ttcatccctcttgacaggcaaagtcaaaatactgcaattgtccttcttacctttaagacaaaggtctcataaacaagatctttcaagcggtcaagaaaat 4329119  T
Q  207 gaaaataagcatgcctgcaagttctgttaaagaaaatagcaatgcaaaccccccaaaaccctgctgcaaatccaactcccattcctacgtagaaatctga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329120 gaaaataagcatgcctgcaagttctgttaaagaaaatagcaatgcaaaccccccaaaaccctgctgcaaatccaactcccattcctacgtagaaatctga 4329219  T
Q  307 tgtgtcaacgaaaccagcatcagaatttccacgctccaaaacttgtttcatttttgtacaatta 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329220 tgtgtcaacgaaaccagcatcagaatttccacgctccaaaacttgtttcatttttgtacaatta 4329283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 161 - 369
Target Start/End: Complemental strand, 4498835 - 4498627
Alignment:
Q  161 aagacaaaggtctcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgttaaagaaaatagcaatgcaaacccccc 260  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||    
T  4498835 aagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgatcaagaaagtagcaatgcaaacccccc 4498736  T
Q  261 aaaaccctgctgcaaatccaactcccattcctacgtagaaatctgatgtgtcaacgaaaccagcatcagaatttccacgctccaaaacttgtttcatttt 360  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||| ||||| |||||||||| ||||||||||||||| | |||    
T  4498735 aaaaccctgctgcaaatccaactcccattcctatgtagaaatctgatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagttt 4498636  T
Q  361 tgtacaatt 369  Q
     ||||||||    
T  4498635 ggtacaatt 4498627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 4498946 - 4498839
Alignment:
Q  12 caacatcctggtagtattaacaatatgagacttcaatgcaacttcaatatcgaccagactcctagtggcgtgcggtatggtacaatttccacattttcat 111  Q
    ||||||| ||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||| |    |||||||||| ||||| ||||||||||||    
T  4498946 caacatcgtggtaatcttaacaatacgagacttcaatacaacttcaatatcgaccagactcctagcg----gcggtatggtccaattcccacattttcat 4498851  T
Q  112 ccctcttgacag 123  Q
    ||||||||||||    
T  4498850 ccctcttgacag 4498839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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