View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4201-Insertion-19 (Length: 160)

Name: NF4201-Insertion-19
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4201-Insertion-19
NF4201-Insertion-19
[»] chr5 (3 HSPs)
chr5 (9-160)||(26379981-26380134)
chr5 (69-147)||(36429633-36429711)
chr5 (69-147)||(5348067-5348145)
[»] chr4 (2 HSPs)
chr4 (69-157)||(27455271-27455359)
chr4 (69-157)||(49681750-49681838)
[»] scaffold0102 (1 HSPs)
scaffold0102 (69-147)||(32703-32781)
[»] chr7 (1 HSPs)
chr7 (69-147)||(36067666-36067744)
[»] chr2 (2 HSPs)
chr2 (69-147)||(10256048-10256126)
chr2 (69-147)||(4592969-4593047)
[»] chr6 (4 HSPs)
chr6 (69-147)||(30709844-30709922)
chr6 (69-147)||(17732512-17732590)
chr6 (69-147)||(15347776-15347854)
chr6 (69-147)||(6009125-6009203)
[»] chr3 (3 HSPs)
chr3 (69-147)||(47471044-47471122)
chr3 (69-147)||(50837955-50838033)
chr3 (69-147)||(54560377-54560455)
[»] chr8 (2 HSPs)
chr8 (69-157)||(20111972-20112061)
chr8 (69-147)||(14791021-14791099)
[»] chr1 (1 HSPs)
chr1 (69-147)||(47445478-47445556)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 3e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 26379981 - 26380134
Alignment:
Q  9 ccttttcatctctcaaattctgaattaatcaaaccctttgaattcatca--aacacaacacaaacagaatgaataatagaaaagatcatgaacttgttgg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| |||||||||||||||||||||||    
T  26379981 ccttttcatctctcaaattctgaattaatcaaaccctttgaattcatcatcaatacaacacaaacagaatgaataacagaaaagatcatgaacttgttgg 26380080  T
Q  107 aaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatgg 160  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26380081 aaaaagaacaaggtttatgatgaataacattaacaacagcaacagcaacaatgg 26380134  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 36429633 - 36429711
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||||||||    
T  36429633 aacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatggacaacaaca 36429711  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 5348067 - 5348145
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  5348067 aacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 5348145  T

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Target: chr4 (Bit Score: 69; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 27455271 - 27455359
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaa 157  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  27455271 aacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaacaa 27455359  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 49681838 - 49681750
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaa 157  Q
    |||| ||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| || ||||||    
T  49681838 aacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaacaa 49681750  T

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Target: scaffold0102 (Bit Score: 67; Significance: 4e-30; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 32703 - 32781
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  32703 aacagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaaca 32781  T

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Target: chr7 (Bit Score: 67; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 36067666 - 36067744
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  36067666 aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaaca 36067744  T

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Target: chr2 (Bit Score: 67; Significance: 4e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 10256048 - 10256126
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  10256048 aacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaaca 10256126  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 4592969 - 4593047
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  4592969 aacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 4593047  T

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Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 30709844 - 30709922
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  30709844 aacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatgaacaacaaca 30709922  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 17732590 - 17732512
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  17732590 aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 17732512  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 15347776 - 15347854
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  15347776 aacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 15347854  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 6009203 - 6009125
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||| ||||||||| |||||||||| || |||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  6009203 aacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 6009125  T

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Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 47471044 - 47471122
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  47471044 aacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaaca 47471122  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 50838033 - 50837955
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  50838033 aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 50837955  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 54560377 - 54560455
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  54560377 aacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 54560455  T

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Target: chr8 (Bit Score: 62; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 20112061 - 20111972
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaagg-tttatgatgaataacattaacaacaacaacagcaacaa 157  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| || ||||||    
T  20112061 aacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggttttatgatgaatagcatgaacaacaacatcaacaacaa 20111972  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 14791021 - 14791099
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    ||||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  14791021 aacagaaagaataacagaaaatatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 14791099  T

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Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 47445556 - 47445478
Alignment:
Q  69 aacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 147  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  47445556 aacagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaaca 47445478  T

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