View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201-Insertion-24 (Length: 117)
Name: NF4201-Insertion-24
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-24 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 1e-51; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 9202970 - 9202868
Alignment:
| Q |
8 |
gaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9202970 |
gaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtt |
9202871 |
T |
|
| Q |
108 |
tct |
110 |
Q |
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||| |
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| T |
9202870 |
tct |
9202868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 9175941 - 9175839
Alignment:
| Q |
8 |
gaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtt |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9175941 |
gaatataactatacaagcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttcactgtt |
9175842 |
T |
|
| Q |
108 |
tct |
110 |
Q |
| |
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||| |
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| T |
9175841 |
tct |
9175839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 9114518 - 9114580
Alignment:
| Q |
48 |
gaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttct |
110 |
Q |
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||||||||| ||||||| |||| |||||||||||||||||| ||||||||| ||||||||| |
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| T |
9114518 |
gaatctttgagatgtagatattcttttgttgttaaaaatggagcttataatttttctgtttct |
9114580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 9164040 - 9164000
Alignment:
| Q |
67 |
attcgtttgttgttaaaaatggattttataatttctctgtt |
107 |
Q |
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|||| |||||||||||| ||||||||||||||||| ||||| |
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| T |
9164040 |
attcatttgttgttaaagatggattttataatttcactgtt |
9164000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 9157941 - 9157882
Alignment:
| Q |
51 |
tctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttct |
110 |
Q |
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|||||||| ||||| |||| |||||||||||| |||| ||||||||||| ||| ||||| |
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| T |
9157941 |
tctttggggtgtagttattcatttgttgttaaagatgggttttataatttttctatttct |
9157882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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