View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4201-Insertion-4 (Length: 988)
Name: NF4201-Insertion-4
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-4 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 756; Significance: 0; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 162 - 949
Target Start/End: Complemental strand, 9421508 - 9420721
Alignment:
| Q |
162 |
tgacatggtcaaaacccaattgtagcaggtgtgaagtagaagacaagatgtgtaaactgaaaagcaatggaactgaagacgagatagaatgttttgatcg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9421508 |
tgacatggtcaaaacccaattgtagcaggtgtgaagtagaagacaagatgtgtaaactgaaaaacaatggaactgaagacgagatagaatgttttgatcg |
9421409 |
T |
|
| Q |
262 |
tcatcacaaacctactaagaagataattctatatgccacaggttagagatacattctttttctgatggttaattcaatttgctgttaagaatttgtccat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9421408 |
tcatcacaaacctactaagaagataattctatatgccacaggttagagatacattctttttctgatggttaattcaatttgctgttaagaatttgtccat |
9421309 |
T |
|
| Q |
362 |
tatttaactatttttcttcaagtatttgtcatatgttttaattcagtgtgcttaaagtcgatgtgtaattatattcgcccctacacgataattactcata |
461 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9421308 |
tatttaactatttttcttcaagtttttgtcatatgttttaattcagtgtgcttaaagtcgatgtataattatattcgcccctacacgataattactcata |
9421209 |
T |
|
| Q |
462 |
gattaattagtgttgttttatgcagttgtgttcgtaggttccgttatgataacactgattattgcagcctgtttgcatctctatagctattttaaactga |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9421208 |
gattaattagtgttgttttatgcagttgtgttcgtaggttccgttatgataacactgattattgcagcctgtttgcatctctatagctattttaaactga |
9421109 |
T |
|
| Q |
562 |
aaggtgaagatgagactagaatcgaaaagttcttagaggattacagggcactcaaccctgcaagattctcttatgttgatataaagaggattacaaataa |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9421108 |
aaggtgaagatgagactagaatcgaaaagttcttagaggattacagggcactcaaccctgcaagattctcttatgttgatataaagaggattacaaataa |
9421009 |
T |
|
| Q |
662 |
ttttagggaagaattaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgcttaaaaacaccgag |
761 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9421008 |
ttttagggaagagttaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgcttaaaaacaccgag |
9420909 |
T |
|
| Q |
762 |
ggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgtgctgatggatcctatc |
861 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
9420908 |
ggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctacc |
9420809 |
T |
|
| Q |
862 |
gtgctcttgtttataatttctttccaaacggttcgttacagaacttcataacccgacctgatgatatggaccattttctcggatggga |
949 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9420808 |
gtgctcttgtttataatttctttccaaatggttcgttacagaacttcataacccgacctgatgatatggaccattttctcggatggga |
9420721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 449 - 949
Target Start/End: Complemental strand, 9438304 - 9437804
Alignment:
| Q |
449 |
ataattactcatagattaattagtgttgttttatgcagttgtgttcgtaggttccgttatgataacactgattattgcagcctgtttgcatctctatagc |
548 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9438304 |
ataattactcataaattaattagtgttgttttgtgcagttgtgttcgtaggttcagttatggtaacactgattattgcagcctgtttgcatctctatagc |
9438205 |
T |
|
| Q |
549 |
tattttaaactgaaaggtgaagatgagactagaatcgaaaagttcttagaggattacagggcactcaaccctgcaagattctcttatgttgatataaaga |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9438204 |
tattttaaactgaaaggtgaagatgagactagaatcgaaaagttcttagaggattacagggcactcaaccctgcaagattctcttatgctgatataaaga |
9438105 |
T |
|
| Q |
649 |
ggattacaaataattttagggaagaattaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgct |
748 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9438104 |
ggattacaaataattttagggaagagttaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgct |
9438005 |
T |
|
| Q |
749 |
taaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgtgct |
848 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9438004 |
taaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgcc |
9437905 |
T |
|
| Q |
849 |
gatggatcctatcgtgctcttgtttataatttctttccaaacggttcgttacagaacttcataacccgacctgatgatatggaccattttctcggatggg |
948 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9437904 |
gatggatcctaccgtgctcttgtttataatttctttccaaatggttcgttacagaacttcataacccgacctgatgatatggaccattttctcggatggg |
9437805 |
T |
|
| Q |
949 |
a |
949 |
Q |
| |
|
| |
|
|
| T |
9437804 |
a |
9437804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 162 - 313
Target Start/End: Complemental strand, 9440081 - 9439930
Alignment:
| Q |
162 |
tgacatggtcaaaacccaattgtagcaggtgtgaagtagaagacaagatgtgtaaactgaaaagcaatggaactgaagacgagatagaatgttttgatcg |
261 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
9440081 |
tgacatggtcaaaacccaattgtagcaagtgtgaaatagaagggaagatgtgtaaactgaaaaacaatggaactgaagacgagatagaatgttttgaccg |
9439982 |
T |
|
| Q |
262 |
tcatcacaaacctactaagaagataattctatatgccacaggttagagatac |
313 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||||||| ||| |||| |
|
|
| T |
9439981 |
tcatcacaaaccaactaaaaagatacttctatatgccacaggtgagatatac |
9439930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 9421650 - 9421543
Alignment:
| Q |
8 |
tgtagttcattaacctgcccggtttatgttgctgattctagtacacgattccttgattcgggtttggacccaatactctgcaccaagactttagatgtta |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9421650 |
tgtagttcattaacctgcccggtttattttgctgattctggtacacgattccttgattcgggtttggacccaatactctgcaccaagactttagatatta |
9421551 |
T |
|
| Q |
108 |
tttcttca |
115 |
Q |
| |
|
||| |||| |
|
|
| T |
9421550 |
ttttttca |
9421543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 9440223 - 9440116
Alignment:
| Q |
8 |
tgtagttcattaacctgcccggtttatgttgctgattctagtacacgattccttgattcgggtttggacccaatactctgcaccaagactttagatgtta |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9440223 |
tgtagttcattatcctgcccggtttatgttgctgattctagtaatacactccttgctttgggtttggacccaatactctgcaccaagactttagatattc |
9440124 |
T |
|
| Q |
108 |
tttcttca |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
9440123 |
tttcttca |
9440116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 676 - 875
Target Start/End: Original strand, 8939176 - 8939375
Alignment:
| Q |
676 |
taggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaaga |
775 |
Q |
| |
|
|||| |||||||||||||| || || | |||||||||||||| | | |||||||||| || ||||||||||||| || |||||||| ||||| | ||| |
|
|
| T |
8939176 |
taggggaaggagctcatggagctgtctataaaggtaaattatcgagtcaaattcttgttgccgtgaagatgcttagtaataccgagggagatgggagaga |
8939275 |
T |
|
| Q |
776 |
gttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgtgctgatggatcctatcgtgctcttgtttat |
875 |
Q |
| |
|
|||||| || |||||| | ||||||||||||||||||| | |||||||| || ||| |||| |||||||| ||||||| ||||||||| | |||||| |
|
|
| T |
8939276 |
gttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatggattttatcgtgctttggtttat |
8939375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 676 - 910
Target Start/End: Original strand, 8926750 - 8926984
Alignment:
| Q |
676 |
taggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaaga |
775 |
Q |
| |
|
|||| |||||||||||||| || || | |||||||||||||| ||| ||||| | || |||||||||||||||| || || ||||| ||||| | || |
|
|
| T |
8926750 |
taggcgaaggagctcatggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtga |
8926849 |
T |
|
| Q |
776 |
gttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgtgctgatggatcctatcgtgctcttgtttat |
875 |
Q |
| |
|
|||||| || || ||| | ||||||||||||| ||||| | ||||||||||| ||| |||| |||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
8926850 |
gttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctctggtttat |
8926949 |
T |
|
| Q |
876 |
aatttctttccaaacggttcgttacagaacttcat |
910 |
Q |
| |
|
| || || || || |||||||| || |||||||| |
|
|
| T |
8926950 |
gactttttcccgaatggttcgttgcaaaacttcat |
8926984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 585 - 898
Target Start/End: Original strand, 9377426 - 9377739
Alignment:
| Q |
585 |
gaaaagttcttagaggattacagggcactcaaccctgcaagattctcttatgttgatataaagaggattacaaataattttagggaagaattaggtgaag |
684 |
Q |
| |
|
||||| ||||| |||||||| || ||| | || || ||||||| |||||| |||||| || || || |||||| ||||| |||| | ||||| |||| |
|
|
| T |
9377426 |
gaaaacttcttggaggattatagagcaatgaaaccaacaagatttacttatgctgatattaaaagaataacaaatggttttaaggaaaatttaggagaag |
9377525 |
T |
|
| Q |
685 |
gagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaagagttcattaa |
784 |
Q |
| |
|
|||||||||| || || |||||||| | |||| | |||||| | || ||||||||| |||| || | || | || |||||||| || ||||| || |
|
|
| T |
9377526 |
gagctcatggagccgtattcaaaggcatgctatcccaagaaattttggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaa |
9377625 |
T |
|
| Q |
785 |
cgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgtgctgatggatcctatcgtgctcttgtttataatttcttt |
884 |
Q |
| |
|
||||| | ||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| | | ||||||||||| ||| |||||||| |
|
|
| T |
9377626 |
tgaagtccgaactatgggaaaaattcatcatttcaatgttgttcgcttgctcggattctgtgctgatggattccaccgtgctcttgtctatgatttcttt |
9377725 |
T |
|
| Q |
885 |
ccaaacggttcgtt |
898 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
9377726 |
ccaaatgggtcgtt |
9377739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 765 - 908
Target Start/End: Complemental strand, 9236627 - 9236484
Alignment:
| Q |
765 |
gatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgtgctgatggatcctatcgtg |
864 |
Q |
| |
|
|||||||| || ||||| |||||||| | ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| | | |||| |
|
|
| T |
9236627 |
gatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccaccgtg |
9236528 |
T |
|
| Q |
865 |
ctcttgtttataatttctttccaaacggttcgttacagaacttc |
908 |
Q |
| |
|
||||||| ||| |||||||||| || || || || ||||||||| |
|
|
| T |
9236527 |
ctcttgtctatgatttctttccgaatggctccttgcagaacttc |
9236484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 681 - 875
Target Start/End: Original strand, 8962108 - 8962302
Alignment:
| Q |
681 |
gaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaagagttca |
780 |
Q |
| |
|
|||||||||||||| || || | ||||||||||||||| | | |||||||||| ||||||||||||||||| || || || || ||||| | |||||||| |
|
|
| T |
8962108 |
gaaggagctcatggagctgtctacaaaggtaaattatcgagtcaaattcttgttgctgtgaagatgcttaataatacagaaggagatgggagagagttca |
8962207 |
T |
|
| Q |
781 |
ttaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgtgctgatggatcctatcgtgctcttgtttat |
875 |
Q |
| |
|
| || ||||| | ||||||||||||| ||||| | |||||||| || || |||| ||||| |||||||||| ||||||||| | |||||| |
|
|
| T |
8962208 |
taaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttggcttttgcgctgatggattttatcgtgctttggtttat |
8962302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 624 - 910
Target Start/End: Original strand, 9299841 - 9300127
Alignment:
| Q |
624 |
agattctcttatgttgatataaagaggattacaaataattttagggaagaattaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatg |
723 |
Q |
| |
|
|||||||| |||| ||| |||||||| |||||||| || |||| ||| | | || |||||||||||||| || |||| ||||||||||||||| | | |
|
|
| T |
9299841 |
agattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatcaagtc |
9299940 |
T |
|
| Q |
724 |
aaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgt |
823 |
Q |
| |
|
|||||| || ||||| |||||||| || ||| | || || ||||| || |||||||| || |||||| | | ||||| ||||| || || ||||||| |
|
|
| T |
9299941 |
aaattcaagttgctgttaagatgctcaataacgctgaaggagatgggaaggagttcataaatgaagtgggaacaatgggcaaaatccaccatctcaatgt |
9300040 |
T |
|
| Q |
824 |
tgttcgcttggttggattttgtgctgatggatcctatcgtgctcttgtttataatttctttccaaacggttcgttacagaacttcat |
910 |
Q |
| |
|
||| || ||| |||| |||||||| ||||||| |||||||||| || ||| | ||||| |||| |||||||| ||||| ||||| |
|
|
| T |
9300041 |
tgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttcttcccaagtggttcgttgcagaaattcat |
9300127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 624 - 855
Target Start/End: Complemental strand, 9467094 - 9466863
Alignment:
| Q |
624 |
agattctcttatgttgatataaagaggattacaaataattttagggaagaattaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatg |
723 |
Q |
| |
|
|||||||| |||| ||| |||||||| |||||||| || |||| ||| | | || |||||||||||||| || |||| |||||||||||| || | |
|
|
| T |
9467094 |
agattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattgtcaagcc |
9466995 |
T |
|
| Q |
724 |
aaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgt |
823 |
Q |
| |
|
||||||| || || || |||||||| || ||||| ||||| ||||| || |||||||| || |||||| | ||||||||||||| ||||| | ||||| |
|
|
| T |
9466994 |
aaattctcgttgccgttaagatgctcaataacactgagggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgt |
9466895 |
T |
|
| Q |
824 |
tgttcgcttggttggattttgtgctgatggat |
855 |
Q |
| |
|
||| || ||| |||| || || |||||||||| |
|
|
| T |
9466894 |
tgtccgtttgcttggcttctgcgctgatggat |
9466863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 624 - 901
Target Start/End: Complemental strand, 8979561 - 8979284
Alignment:
| Q |
624 |
agattctcttatgttgatataaagaggattacaaataattttagggaagaattaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatg |
723 |
Q |
| |
|
||||| |||| || ||||||||| || || |||||| |||| |||| || |||| ||||||||||| || ||| || ||||| ||| | || |||| |
|
|
| T |
8979561 |
agattttcttttgctgatataaaaagaatcacaaatgggtttaaggaaaaactaggagaaggagctcacggaaaagtatttaaaggaaaactctcaaatg |
8979462 |
T |
|
| Q |
724 |
aaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgt |
823 |
Q |
| |
|
| ||||| || ||||||||||| || || || || || || || || ||||||||||||| ||||||| | |||||||||||| || ||||||||||| |
|
|
| T |
8979461 |
agattctggttgctgtgaagattctcaacaatacagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgt |
8979362 |
T |
|
| Q |
824 |
tgttcgcttggttggattttgtgctgatggatcctatcgtgctcttgtttataatttctttccaaacggttcgttaca |
901 |
Q |
| |
|
|||||| ||| |||| || ||||| || ||| |||||| |||||| || ||||| ||| |||| ||||||||||| |
|
|
| T |
8979361 |
tgttcgattgcttggcttctgtgcagagggaattcatcgtgttcttgtctacaatttattttcaaagggttcgttaca |
8979284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 591 - 659
Target Start/End: Complemental strand, 9236801 - 9236733
Alignment:
| Q |
591 |
ttcttagaggattacagggcactcaaccctgcaagattctcttatgttgatataaagaggattacaaat |
659 |
Q |
| |
|
||||||||||||||||||||| | || ||| |||||||| |||||| |||||| ||||| || |||||| |
|
|
| T |
9236801 |
ttcttagaggattacagggcattgaaacctacaagattcacttatgctgatattaagagaataacaaat |
9236733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 805 - 854
Target Start/End: Original strand, 9495206 - 9495255
Alignment:
| Q |
805 |
aaattcatcacatcaatgttgttcgcttggttggattttgtgctgatgga |
854 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
9495206 |
aaattcatcacgtcaatgttgttcacttagttggcttttgtgccgatgga |
9495255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 624 - 910
Target Start/End: Original strand, 9171244 - 9171530
Alignment:
| Q |
624 |
agattctcttatgttgatataaagaggattacaaataattttagggaagaattaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatg |
723 |
Q |
| |
|
|||||||| |||| ||| |||||||| || |||||||| |||| ||| | ||||| |||||||||||||| || |||| ||||||||||||||| | |
|
|
| T |
9171244 |
agattctcctatgctgacataaagagaatcacaaataaatttaaggataagttaggcgaaggagctcatggagctgtttacaaaggtaaattatcaagcc |
9171343 |
T |
|
| Q |
724 |
aaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgt |
823 |
Q |
| |
|
||||||| || | ||| |||||||| || ||||| ||||| ||||| || |||||||| || |||||| | ||||||| ||||| || || | ||||| |
|
|
| T |
9171344 |
aaattctagttggtgttaagatgctaaataacacagagggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgt |
9171443 |
T |
|
| Q |
824 |
tgttcgcttggttggattttgtgctgatggatcctatcgtgctcttgtttataatttctttccaaacggttcgttacagaacttcat |
910 |
Q |
| |
|
||| || ||| |||| ||||| || ||||||| |||||||||| || ||| |||| || ||||| ||||| || ||||| ||||| |
|
|
| T |
9171444 |
tgtccgtttgcttggcttttgcgccgatggatttcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcat |
9171530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 911
Target Start/End: Original strand, 1272 - 1640
Alignment:
| Q |
543 |
tatagctattttaaactgaaaggtgaagatgagactagaatcgaaaagttcttagaggattacagggcactcaaccctgcaagattctcttatgttgata |
642 |
Q |
| |
|
||||| ||| ||||| ||||||| |||||| | || ||||| ||||| || || ||||||||||||| | || || | || |||||||||| || |
|
|
| T |
1272 |
tatagatatgttaaaatgaaaggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagact |
1371 |
T |
|
| Q |
643 |
taaagaggattacaaataattttagggaagaattaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaa |
742 |
Q |
| |
|
| ||||| ||||||||||| |||| || | |||| ||||| |||||||| || |||| |||||||||||||| || ||||||| || || ||||| |
|
|
| T |
1372 |
tgaagagaattacaaataaatttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaa |
1471 |
T |
|
| Q |
743 |
gatgcttaaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattt |
842 |
Q |
| |
|
||| ||||| || | ||||| ||||| || || ||||| || |||||| | | ||||| ||||| || || ||||||| ||||| ||| |||| ||| |
|
|
| T |
1472 |
gattcttaataatgcagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttggcttt |
1571 |
T |
|
| Q |
843 |
tgtgctgatggatcctatcgtgctcttgtttataatttctttccaaacggttcgttacagaacttcata |
911 |
Q |
| |
|
|| || ||||| | ||||||| | |||||| | || |||||||| |||||||||||||| |||||| |
|
|
| T |
1572 |
tgcgcagatggttttcgtcgtgctttagtttatgacttttttccaaatggttcgttacagaaattcata |
1640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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