View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201-Insertion-5 (Length: 929)
Name: NF4201-Insertion-5
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 319 - 807
Target Start/End: Original strand, 32437721 - 32438206
Alignment:
| Q |
319 |
gagatatctcaatgtgatggattttgctttctatcagcatttggagattgagttacaattcttgtaattttgattacttacattttcatatatagcatac |
418 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
32437721 |
gagatatctcaatgtgatggattttgctttccatcagcatttggagattgagttacaattcttgtaattttgattatttacatattcatatatagcatac |
32437820 |
T |
|
| Q |
419 |
atatgtttattctatatatt----taataaaataaatattgttgagattttcactttatcttcactctcaaatgtgatttctaacagtttcttgtataat |
514 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32437821 |
atatgtttattctatatatttatttaataaaataaatattgttgagattttcactttatcttcactctcaaatgtgatttctaacagtttcttgtataat |
32437920 |
T |
|
| Q |
515 |
tttttgtttgatgatatgaaaatattgcaatgatgatttgttgtgttataaactataatcaactttagttgaagagtaagcatagnnnnnnnnnnnnnnn |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||| |||| |
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| T |
32437921 |
tttttgtttgatgatatgaaaatattgcaatgatgatttgttgtgtaataaactagaatcaacttttggggaagagtaa-tatagttttttttttttttt |
32438019 |
T |
|
| Q |
615 |
ngacaaggaacagtaagtatagatgattttactatacacgtgacnnnnnnnnnnnaactcaggttcctagaggaaatgaaacttatcaacctgcagttca |
714 |
Q |
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||||||| ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||| | | |||||| |
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| T |
32438020 |
a-acaaggagcagtaagtatagatgattttactatacacgtaac----tttttttaactcatgttcctagaggaaat-aaacttatcaatccggagttca |
32438113 |
T |
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| Q |
715 |
attgataggtatataaagtgtgattaagaattgtttcccccaataatcaaatttagcttttcccaaacgatttatcttcaagtgaagtttttg |
807 |
Q |
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||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32438114 |
attgataactatataaagtgtgattaagaattatttcacccaataatcaaatttagcttttcccatacgatttatcttcaagtgaagtttttg |
32438206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 32437411 - 32437626
Alignment:
| Q |
8 |
gtttgagctcttcattgcagcaacaatttcaatcagagggtagtgttcctcttaaattgaacgtgaaacaacctgtgaggattaagcttgggaaattgaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32437411 |
gtttgagctcttcattgcagcaacaatttcaatcagagggtagtgttcctcttaaattgaacgtgaaacaacctgtgaggatcaagcttgggaaattgaa |
32437510 |
T |
|
| Q |
108 |
gcttcccaaaattaatttcagggttaggtgtactattgtggtggatagtcttagtgctaataattctattagaattaggagcagtagttgtaaatttagg |
207 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32437511 |
gcttcccaaaattaatttcagggtcaggtgtacaattgtggtggatagtcttagtgctaataattctattagaattaggagcagtagttgtaaatttagg |
32437610 |
T |
|
| Q |
208 |
tttaggctttgaattc |
223 |
Q |
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|||||||||||||||| |
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| T |
32437611 |
tttaggctttgaattc |
32437626 |
T |
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