View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201-Insertion-6 (Length: 841)
Name: NF4201-Insertion-6
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 626; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 7 - 719
Target Start/End: Complemental strand, 4137316 - 4136626
Alignment:
| Q |
7 |
atgattagtgtttatttacaatgtagacaattccaaggaagttctggcttgataagaatgggaagcaattaatgcaatggccaattgaagagttagaaaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4137316 |
atgattagtgtttatttacaatgtagacaattccaaggaagttctggcttgataagaatgggaagcaattaatgcaatggccaattgaagagttagaaaa |
4137217 |
T |
|
| Q |
107 |
acttcgtggcaaacaaatcaatatcactggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatctcaggtacacaactaaact |
206 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4137216 |
acttcgtggcaaacaaatcaatatcaccggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatctcaggtacacaactaaact |
4137117 |
T |
|
| Q |
207 |
gactcatgttgtgtgttttctcagattctgttgataaatttttagtaattaacttatttaatttaacttttaaggctgatgtggaagtcttgtttgagct |
306 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4137116 |
gattcatgttgtgtgttttctcagattctgttgataaatttttagtaattaacttatttaatttaacttttaaggctgatgtggaagtcttgtttgagct |
4137017 |
T |
|
| Q |
307 |
acccaatctacaaagtgctgagttgctagaaccaagtgaagttgatcctcaagaactctgtaaagaacaatatgcatcaagaaatggcatgataggacca |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4137016 |
acccaatctacaaagtgctgagttgctagaaccaagtgaagttgatcctcaagaactctgtaaagaacaatatgcatcaagaaatggcatgataggacca |
4136917 |
T |
|
| Q |
407 |
tttggtttgcaagctttagcatcaaaagaccaaacagagaggactacaatatctttccgaatatatagagccggcgatggattcaaatgcttgatgataa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4136916 |
tttggtttgcaagctttagcatcaaaagaccaaacagagaggactacaatatctttccgaatatatagagccggcgatggattcaaatgcttgatgataa |
4136817 |
T |
|
| Q |
507 |
gtgaccagaccaggttatattttacactattcgaacttattttacggtgcatatatttcattttcaatgatattgaatctctcattgagggattcaaatt |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4136816 |
gtgaccagaccaggttatattttacactattcgaatttattttacggtgcatatatttcattttcaatgacattgaatctctcattgagggattcaaatt |
4136717 |
T |
|
| Q |
607 |
ttctatagccacattgtcgatattacaattctagatggaagtacatggataacagaaaagcatagaaagggaaataaaacagaaattgtatttgataatg |
706 |
Q |
| |
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| T |
4136716 |
t----------------------tacaattctagatggaagtacatggataacagaaaagcatagaaagggaaataaaacagaaattgtatttgataatg |
4136639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 269 - 642
Target Start/End: Complemental strand, 4128280 - 4127904
Alignment:
| Q |
269 |
ttaactttt-aaggctgatgtggaagtcttgtttgagctacccaatctacaaagtgctgagttgctagaaccaagtgaagttgatcctcaagaactctgt |
367 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |
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| T |
4128280 |
ttaacttttcaaggctgatgtggaagttttgtttgggctacctgatctacaaagtgctgagctgctagaaccaagtgaaactaatcctcaagaactctgt |
4128181 |
T |
|
| Q |
368 |
aaagaacaatatgcatcaagaaatggcatgataggaccatttggtttgcaagctttagcatcaaaagaccaaacagagaggactacaatatctttccgaa |
467 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| | |
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| T |
4128180 |
aaagaacaatatgcatcaagaaaatgcatgatagggccatttggtttgcaagccttagcatcaaaagaccagacagagaagactacaatatctttccgga |
4128081 |
T |
|
| Q |
468 |
tatatagagccggcgatggattcaaatgcttgatgataagtgaccagaccaggtta-tattttacactattcgaacttattttacggtgcatatatttca |
566 |
Q |
| |
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||||||||| || ||| | ||||| ||||||||||||||||||||||||||| | ||||||||| ||| |||||||| | | ||||||| |||||| |
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| T |
4128080 |
tatatagagtcgcggatcattataaatgtttgatgataagtgaccagaccaggttatttttttacactcttcaaacttattctgcagtgcatacatttca |
4127981 |
T |
|
| Q |
567 |
-ttttcaatgatattgaatctctcattgagggattcaaattttctatagccacattgtcgatattacaattctagat |
642 |
Q |
| |
|
|||||||||| || ||||||||| |||| | |||||||||||||| | |||||||||||||||||||||| ||||| |
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|
| T |
4127980 |
tttttcaatgacatcgaatctctctttgaagtattcaaattttctacatccacattgtcgatattacaattatagat |
4127904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 265 - 521
Target Start/End: Complemental strand, 4141965 - 4141708
Alignment:
| Q |
265 |
taatttaactttt-aaggctgatgtggaagtcttgtttgagctacccaatctacaaagtgctgagttgctagaaccaagtgaagttgatcctcaagaact |
363 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4141965 |
taatttaacttttcaaggctgatgtggaagtcttgtttgagctacctgatctagaaagtgctgaggtgctagaaccaagtgaagttgatcctcaagaact |
4141866 |
T |
|
| Q |
364 |
ctgtaaagaacaatatgcatcaagaaatggcatgataggaccatttggtttgcaagctttagcatcaaaagaccaaacagagaggactacaatatctttc |
463 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |
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| T |
4141865 |
ctgtaaagaacaatatgcatcaataaaaggcatgatagggccatttggtttgcaagctttagcatcagaagaccagacagagagaactacaatatctttc |
4141766 |
T |
|
| Q |
464 |
cgaatatatagagccggcgatggattcaaatgcttgatgataagtgaccagaccaggt |
521 |
Q |
| |
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||||||||||||| | |||||| || ||||||||||||||||||||||||||||||| |
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| T |
4141765 |
cgaatatatagagtcagcgatgaatataaatgcttgatgataagtgaccagaccaggt |
4141708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 4128687 - 4128484
Alignment:
| Q |
23 |
tacaatgtagacaattccaaggaagttctggcttgataagaatgggaagcaattaatgcaatggccaattgaagagttagaaaaacttcgtggcaaacaa |
122 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| | | |||| || ||||||||| ||||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
4128687 |
tacaatgtagactattccaaggaagttttggcttgatgaaagtggggagagattaatgcagtggccaattgaagagttagaaaaacttggtggcaatcaa |
4128588 |
T |
|
| Q |
123 |
atcaatatcactggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatctcaggtacacaactaaactgactcatgttgtgtgt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| | |||||||||| | |
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|
| T |
4128587 |
atcaatatcactggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatcacaggtacgtaattaaactaatgcatgttgtgttt |
4128488 |
T |
|
| Q |
223 |
tttc |
226 |
Q |
| |
|
|||| |
|
|
| T |
4128487 |
tttc |
4128484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 4142388 - 4142200
Alignment:
| Q |
7 |
atgattagtgtttatttacaatgtagacaattccaaggaagttctggcttgataagaatgggaagcaattaatgcaatggccaattgaagagttagaaaa |
106 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||||||||| ||||||||| | | |||||||| |||| |||| |||||||| |||||||||||| | |
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|
| T |
4142388 |
atgattagagtttctctacaatgtagacaattccaaggaagttttggcttgatgaaagtgggaagcgattactgcagtggccaatcgaagagttagaaca |
4142289 |
T |
|
| Q |
107 |
acttcgtggcaaacaaatcaatatcactggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatctcaggtac |
195 |
Q |
| |
|
||| ||| ||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4142288 |
actacgttacaatcaaatcaatatcactagagagacactcctaagtggatcaactcttgaagtaataggtatcactgcatctcaggtac |
4142200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 750 - 840
Target Start/End: Complemental strand, 4136626 - 4136537
Alignment:
| Q |
750 |
tatagtagatctcggccattagataaacattgaacgattatatctcaacaaatgatcaagactaggagctcatgaaattaagttttgcaaa |
840 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
4136626 |
tatagcagatctcggccattagataaacattgaacgattatatctcaacaaatgatcaagacta-gagctcatgaaattaagttttgcaaa |
4136537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 275 - 432
Target Start/End: Complemental strand, 4117190 - 4117030
Alignment:
| Q |
275 |
tttaaggctgatgtggaagtcttgtttgagctacccaatctacaaagtgctgagttgctagaa---ccaagtgaagttgatcctcaagaactctgtaaag |
371 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||| | ||| |||||| ||| | | ||||| || |||||||||||||||||| ||| |||| |
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|
| T |
4117190 |
tttaaggttgatgtagaagtgttgtttgagctacctgagctagaaagtggtgactggttagaagatcctagtgaagttgatcctcaactactatgtagca |
4117091 |
T |
|
| Q |
372 |
aacaatatgcatcaagaaatggcatgataggaccatttggtttgcaagctttagcatcaaa |
432 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
4117090 |
aacaacatgcatcaagaagtggcaaaataggaccgtttggtttgttagctttagcttcaaa |
4117030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 4117450 - 4117309
Alignment:
| Q |
26 |
aatgtagacaattccaaggaagttctggcttgataagaatgggaagcaattaatgcaatggccaattgaagagttagaaaaacttcgtggcaaacaaatc |
125 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||| | ||||||| ||| |||||||||||||||||||| ||||||| || | |||||||||| |
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| T |
4117450 |
aatgtagacaattccaaggaaagtttggctagataaaagtgggaagagattgatgcaatggccaattgaagaaatagaaaatctaagacacaaacaaatc |
4117351 |
T |
|
| Q |
126 |
aatatcactggagaaacactccaaagtggatcaactcttgaa |
167 |
Q |
| |
|
| ||| || ||||| | ||| | ||||||||||||||||| |
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|
| T |
4117350 |
agtattacaggagagaaacttgagggtggatcaactcttgaa |
4117309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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