View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201-Insertion-7 (Length: 792)
Name: NF4201-Insertion-7
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-7 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 159 - 792
Target Start/End: Complemental strand, 48533500 - 48532835
Alignment:
| Q |
159 |
accttcattattctgatcgcaatgtgacaattgcggtatcttctttagcaatttgctt---------------------ctttagcctcgcaagagacct |
237 |
Q |
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| T |
48533500 |
acctacattattctgatcgcaatgtgacaattgcggtatattctttagcaatttgcttctttgcaagtggcgccttcttctttagcctcgcaagagacct |
48533401 |
T |
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| Q |
238 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
337 |
Q |
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| T |
48533400 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
48533301 |
T |
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| Q |
338 |
tcttacatcatcaactccgcagca----ccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatg-ttttg |
432 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48533300 |
tctta---catcaactccgcagcaccagccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatgtttttg |
48533204 |
T |
|
| Q |
433 |
ttattgttggtttagttcatgg---------aacaaacttaattcatttctatttgatatttttctcaattcatttctattggagaaatccatcttatgt |
523 |
Q |
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| T |
48533203 |
ttattgttggtttggttcatggaacaaacaaaacaaacttaattcatttctatttgatatttttctcaattcatttctattggagaaatccatcttatat |
48533104 |
T |
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| Q |
524 |
attaaatgcaattcacggggctttggcatcaactcaatcaaacttttgtttctggtcgttgttcttccattccaattacttttaacttaatcaattatac |
623 |
Q |
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| T |
48533103 |
attaaatgcaattcacggggctttggcatcaactcaatcaaacttttgtttctggtcgttgttcttctattccaattacttttaacttaatcaattatac |
48533004 |
T |
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| Q |
624 |
atgaatgtatgtttcttatagctttcatttaattttgtggctttctttattaagtaatcgttacaagctccattttttcggttctaagcttgaatggagc |
723 |
Q |
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| T |
48533003 |
atgaatgtatgtttcttatagctttcatttaattttgtggctttctttattaagtgatcgttccaagctccattttttcggttctaagcttgaatggagc |
48532904 |
T |
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| Q |
724 |
ttagtcaagtgcttagaaaaatcatgtttatccaactattagtattttatgcaaattaaattcttcctc |
792 |
Q |
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| T |
48532903 |
ttaggcaagtgcttaaaaaaatcatgttcatccaactattagtattttatgcaaattaaattcttcctc |
48532835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 527 - 673
Target Start/End: Complemental strand, 48535940 - 48535797
Alignment:
| Q |
527 |
aaatgcaattcacggggctttggcatcaactcaatcaaacttttgtttctggtcgttgttcttccattccaattacttttaacttaatcaattatacatg |
626 |
Q |
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| T |
48535940 |
aaatgcaattcacggggcttgggcatcgactcaataaaactt--gtttttggtggttgttcttccattccaattacttttcact-aatcaattatatatg |
48535844 |
T |
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| Q |
627 |
aatgtatgtttcttatagctttcatttaattttgtggctttctttat |
673 |
Q |
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| T |
48535843 |
aatgtatgattcttatagctttcatttaattgtgtggttttctttat |
48535797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 695 - 785
Target Start/End: Complemental strand, 48535745 - 48535654
Alignment:
| Q |
695 |
attttttcggttctaagcttgaatggagcttagtcaagtgcttagaaaaatcatgtttatccaa-ctattagtattttatgcaaattaaatt |
785 |
Q |
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| T |
48535745 |
atttttttggttctaagcttgaatggagcttaggcaagtgcttaaaaaaataatgttcatccaacctattagtattttattcaaattaaatt |
48535654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 48533613 - 48533527
Alignment:
| Q |
65 |
gatggatatgcatgctcttattgcttcttcttcattycatttcatttcatttcakggcttacgtcgattactactttgttgcggttattacggcacc |
161 |
Q |
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| T |
48533613 |
gatggatatgcatgctcttattgcttcttcttcatt----------tcatttcagggcttacgtcgattactactttgttgcggttattatggcacc |
48533527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 48536336 - 48536225
Alignment:
| Q |
234 |
acctctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgt |
333 |
Q |
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|||||||||||| ||||||||||||||||| || ||||| ||| || | ||||||| | |||||||||||||||||||||||| |||||||||| ||| |
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| T |
48536336 |
acctctctcacatagatcagatcaacactcgtagattccgggtcctcaggctattggg-tatcttacatctctatgtggcttatgtttattattcactgt |
48536238 |
T |
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| Q |
334 |
ggtatcttacatc |
346 |
Q |
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|||| |||||||| |
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| T |
48536237 |
ggtaacttacatc |
48536225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 357 - 461
Target Start/End: Complemental strand, 48536193 - 48536082
Alignment:
| Q |
357 |
cagcaccagcctagcctagttctgttgtt-----gttcttt-----aggctgtttctaaaagcattctagtatagtatatgttttgttattgttggttta |
446 |
Q |
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| T |
48536193 |
cagcaccagcctagcctagttctgttgttacgttgttctttggtttaggctgtttataaaagcattccagtatag--tatgtcttgttattgttgg-ttg |
48536097 |
T |
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| Q |
447 |
gttcatggaacaaac |
461 |
Q |
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| T |
48536096 |
gttcatggaacaaac |
48536082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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