View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4201-Insertion-8 (Length: 675)
Name: NF4201-Insertion-8
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 7 - 666
Target Start/End: Complemental strand, 41777960 - 41777303
Alignment:
| Q |
7 |
accaactagtgtttgtagcttaaccttgtcagagcatactaatgagaaggtttggtgttaaatttcatagtattatttggaaattatgttagtggtatct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777960 |
accaactagtgtttgtagcttaaccttgtcagagcatactaatgagaaggtttggtgttaaatttcatagtattatttggaaattatgttagtggtatct |
41777861 |
T |
|
| Q |
107 |
tcaagtgtttgtgcatcacaatttaaagtttatttacnnnnnnnnnnnnnnnnnnnnttgacatttttggatgttagatagagcatcaatgcattaataa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777860 |
tcaagtgtttgtgcatcacaatttaaagttcatttacaaaaaaaaaaaaaaaaaaaattgtcatttttggatgttagatagagcatcaatgcattaataa |
41777761 |
T |
|
| Q |
207 |
tgtgattgattttctgagacttaatagtgaaaacaagtttatggtatctagatttcctctgctttaaacgatctcattaactactttagtttaaaactcc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777760 |
tgtgattgattttctgagacttaatagtgacaacaagtttatggtatctagatttcctctgctctaaacgatctcattaactactttagtttaaaactcc |
41777661 |
T |
|
| Q |
307 |
taaggctgcatatcagaaatttgacctgtttttgtgttaaactcgccttatattttcattcatgtcattttgttgctcacatcttccacctcttgcttga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777660 |
taaggctgcatatcagaaatttgacctgtttttgtgttaaactcgccttatattttcattcatgtcattttgttgctcacatcttccacctcttgcttga |
41777561 |
T |
|
| Q |
407 |
acaaaactttgcggtttataagctaccaatttatatcttgcatgtggttcataaacaattgaggaatatactactatccattatagcatttcttagcccc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41777560 |
acaaaactttgcggtttataagctaccaatgtatatcttgcatgtggttcataaacaattgaggaatatactactatccattgtagcatttcttagcccc |
41777461 |
T |
|
| Q |
507 |
tgcttgttttcacagtgtaggcaagttggacgtgcggtagttatgaagctacctcgtggagctgcgacatcagcgcatattggggagtaacgtcactatg |
606 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
41777460 |
tgcttgttttcacagtggaggcaagttggacgtgcggtagttatgaagctacctcgtggagctgcgacatcagcgcatatt-gggagtaacatcactatg |
41777362 |
T |
|
| Q |
607 |
gaaataaaacatctgcttagattagctttaacttgacaaatacaaaaaggttagattagt |
666 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
41777361 |
gaaat-aaacatctgcttaggttagctttaacttgacaaatacaaaaatgttaaattagt |
41777303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 23602762 - 23602712
Alignment:
| Q |
46 |
taatgagaaggtttggtgttaaatttcatagtattatttggaaattatgtt |
96 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
23602762 |
taatgagaaggtttggtgccaagtttcatagtattatttggaaattgtgtt |
23602712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University